Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30a22
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418...    28   6.2  
06_03_1448 + 30235336-30236763                                         28   6.2  
06_03_1443 + 30182018-30183445                                         28   6.2  
06_03_1440 + 30166515-30167942                                         28   6.2  
06_03_1437 + 30151030-30152457                                         28   6.2  
06_03_1429 + 30100834-30102261                                         28   6.2  
06_03_1425 + 30084383-30085810                                         28   6.2  
06_03_1420 - 30053713-30055140                                         28   6.2  
11_06_0235 + 21588212-21589029,21589426-21591358                       28   8.1  

>07_01_0564 -
           4183441-4183530,4183683-4183752,4183972-4184063,
           4184141-4184240,4184372-4184478,4184703-4184768,
           4184879-4185013,4185653-4185808,4186113-4186262,
           4186426-4186557,4187604-4187693
          Length = 395

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 519 QFISNYTGQILQPSKTGLCQKKHKELLVAIERAWDQGL 632
           Q I +  GQ+++P KT + +K  +E+   + R  D+G+
Sbjct: 194 QDILSLMGQMMKPRKTEITEKLRQEINKVVNRYIDEGI 231


>06_03_1448 + 30235336-30236763
          Length = 475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 DLRSSLRFYCSSTDNGPNESDEQPAVDPTKDRTKVIP 296
           +  S+LR Y SS  +G   S+E    +P +DR   IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193


>06_03_1443 + 30182018-30183445
          Length = 475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 DLRSSLRFYCSSTDNGPNESDEQPAVDPTKDRTKVIP 296
           +  S+LR Y SS  +G   S+E    +P +DR   IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193


>06_03_1440 + 30166515-30167942
          Length = 475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 DLRSSLRFYCSSTDNGPNESDEQPAVDPTKDRTKVIP 296
           +  S+LR Y SS  +G   S+E    +P +DR   IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193


>06_03_1437 + 30151030-30152457
          Length = 475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 DLRSSLRFYCSSTDNGPNESDEQPAVDPTKDRTKVIP 296
           +  S+LR Y SS  +G   S+E    +P +DR   IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193


>06_03_1429 + 30100834-30102261
          Length = 475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 DLRSSLRFYCSSTDNGPNESDEQPAVDPTKDRTKVIP 296
           +  S+LR Y SS  +G   S+E    +P +DR   IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193


>06_03_1425 + 30084383-30085810
          Length = 475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 DLRSSLRFYCSSTDNGPNESDEQPAVDPTKDRTKVIP 296
           +  S+LR Y SS  +G   S+E    +P +DR   IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193


>06_03_1420 - 30053713-30055140
          Length = 475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 DLRSSLRFYCSSTDNGPNESDEQPAVDPTKDRTKVIP 296
           +  S+LR Y SS  +G   S+E    +P +DR   IP
Sbjct: 157 EFTSTLRLYRSSCSSGSWTSEEVSVEEPVRDRLCPIP 193


>11_06_0235 + 21588212-21589029,21589426-21591358
          Length = 916

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 364 HTGFSP*VCIYALLAKYLRLCSTGITLVLSLVGSTAGCSSDSLGPLSVD 218
           +TG +        L K +RLC    T VL+ VG+       SLG +S+D
Sbjct: 631 NTGLAALPASVGKLNKLMRLCVDRETRVLASVGNLTSLQELSLGLVSID 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,529
Number of Sequences: 37544
Number of extensions: 326986
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)