Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30a09
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 53 3e-08
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 31 0.21
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.36
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.48
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.48
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 29 0.83
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.9
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 2.5
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 26 4.4
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 5.9
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 7.8
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.8
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 25 7.8
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 25 7.8
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 53.2 bits (122), Expect = 3e-08
Identities = 26/48 (54%), Positives = 35/48 (72%)
Frame = +3
Query: 120 VSDVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDIN 263
+SD +KV ELR++L +GLS AG+KAEL++RL AA S DE+T N
Sbjct: 1 MSDYKSLKVAELREKLAEKGLSTAGNKAELVSRLTAATESNDENTSNN 48
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 459 KDKSAENASAKKIVLNRPSSIS--LVSSKTVDDQINEKSVEPKTASESNNV 605
+D+ EN +A + ++N+ + S V+ TV+ NE+ EP E N V
Sbjct: 438 EDEKEENNTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEIIEENAV 488
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 29.9 bits (64), Expect = 0.36
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +3
Query: 375 LSEQSSTATIAVETKSTRTLKRKTNAE-TKDKSAENASAKKIVLNRPSS--ISLVSSKTV 545
+ E SS A + E K T K+ ++ + D +++N V ++ +S S ++S +V
Sbjct: 281 VEEHSSIAKLDSEEKIRETKKKNSSTSLSPDPTSDNFEWGSWVSSQDTSKNSSNLASASV 340
Query: 546 DDQINEKSVEPKT 584
DD E VEP T
Sbjct: 341 DDVSEESQVEPNT 353
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 29.5 bits (63), Expect = 0.48
Identities = 19/82 (23%), Positives = 35/82 (42%)
Frame = +3
Query: 360 NEDLVLSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSK 539
N DL++SE+ + + T + +K+N + K+ N + P S + SSK
Sbjct: 272 NADLIISEEDELTEMTLRTANGSEPTKKSNRSEQSKTVANTNVGSKNGTTPRSFAQKSSK 331
Query: 540 TVDDQINEKSVEPKTASESNNV 605
+ + E S T +E +
Sbjct: 332 RI--KPTEGSANLNTVTELTGI 351
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.5 bits (63), Expect = 0.48
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +3
Query: 375 LSEQSSTATIAVETKSTRTLKRKTNAETKDK--SAENASAKKIVLNRPSSISLVSSK--T 542
+S S ++ VET L+ TN+E +D+ S V +SIS + ++ T
Sbjct: 1 MSSSSKDSSFQVETPVQNILETSTNSELQDQVSSPYEPDYNSPVKQAAASISALQTQDDT 60
Query: 543 VDDQINEKSVEPKTASESNN 602
+ + ++E+++E K ++S++
Sbjct: 61 LFNNVDERTLENKDGNKSDD 80
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 28.7 bits (61), Expect = 0.83
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +3
Query: 378 SEQSSTATIAVETKSTRTLKRKT-NAETKDKSAEN-ASAKKIVLNRPSSISLVSSKTVDD 551
S +S V + + +KT NAE + K A+ + K N + S S+ TVD
Sbjct: 88 SSPASKMRNTVNLQHIQAANQKTRNAEGERKVAQRRVQSDKAEANDAAMSS--SAPTVDV 145
Query: 552 QINEKSVEPKTASESNNVIKINTDLDPKKRLELRAKR 662
+ EPK + ++ ++N D++ K ++ A +
Sbjct: 146 SEGNSAAEPKITPDDSDTPRLNVDMNDKINVDEAAAK 182
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 1.9
Identities = 26/137 (18%), Positives = 55/137 (40%)
Frame = +3
Query: 228 AIISQDEHTDINFEFDEMDSDGVFEDEEVKSQXXXXXXXXXXXXNEDLVLSEQSSTATIA 407
+++S++E++D E ++D + E++ + EDL+ +EQ S A
Sbjct: 3967 SVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPN--EEDLLETEQKSNEQSA 4024
Query: 408 VETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSVEPKTA 587
+S K N +DK + ++ S + + I E + +P
Sbjct: 4025 ANNESDLVSKEDDNKALEDKDRQEKEDEE-----EMSDDVGIDDEIQPDIQENNSQPPPE 4079
Query: 588 SESNNVIKINTDLDPKK 638
+E + + + LD K+
Sbjct: 4080 NEDHLDLPEDLKLDEKE 4096
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 126 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFED 305
D + MKV + L+SR + I A SQ++ ++ +FE +E D D +FE
Sbjct: 681 DFSTMKVECSNEALRSRVVHVLSRAINTILPFSEA--SQNDVSEDDFENEESDDDKIFEQ 738
Query: 306 E 308
+
Sbjct: 739 Q 739
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 3.4
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 411 ETKSTRTLKRKTNAETKDKSAENASAKKIVLNR--PSSISLVSSKTVDDQINEKSVEPKT 584
E K R +RK E + + K+I L + PSSI +V DD +N+K +
Sbjct: 59 EKKRLRKEERKRKIEAGE--VVKSQKKRIRLGKVVPSSIRIVLDCAFDDLMNDKEINSLC 116
Query: 585 ASESNNVIKINTDLDPKKRLELRAKRFGLPIK 680
+ T L P +EL A FG +K
Sbjct: 117 QQVTRCHSANRTALHP---VELFATNFGGRLK 145
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 154 SSTTF-ILVTSETVESAMVIKSSLRY*TRNF*NAYTRCL 41
S TF I+ S+ VES ++ S +Y +N+ N RC+
Sbjct: 120 SDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWNGSWRCI 158
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 399 TIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSVEP 578
TI V T +T+ + + + ++++S+ S IS + DD++NE S E
Sbjct: 237 TIHVFTSTTQVHTESSYETSSSEQSDDSSSSS------SCISDSEESSSDDELNELSNEK 290
Query: 579 KTASESNNV 605
K S + NV
Sbjct: 291 KANSPTQNV 299
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +3
Query: 411 ETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSK--TVDDQINEKSVEPKT 584
E K T + K N+ +D S + +LNR + + +K T + + E S+
Sbjct: 266 EEKKTISQGNKPNSRDED-SELSIDVPLSMLNRSLANNSQKNKKRTPNKPLQESSINSVK 324
Query: 585 ASESNNVIKINTDLDPKKRLEL 650
ESN V+K K +LE+
Sbjct: 325 EGESNPVVKRKRGRPRKNKLEI 346
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 546 DDQINEKSVEPKTASESNNVIKINTDLDPKKR 641
+D++ +S++ K ++ +IKINT L K R
Sbjct: 13 EDKLPMESLKKKFLKQNREIIKINTQLSIKIR 44
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 549 DQINEKSVEPKTASESNNVIKINTDL 626
D+INEK + +AS IK++ D+
Sbjct: 602 DEINEKCAKSASASSIEEAIKVSKDI 627
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 531 SSKTVDDQINEKSVEPKTASESN 599
S TVDDQI + +PK +S+++
Sbjct: 312 SKSTVDDQILSTAAQPKKSSDTD 334
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 447 WFCVLMFVLILFLQRLSQ*KTVPKELNLR 361
+FC+L+F +I F + S K PKEL ++
Sbjct: 9 YFCILLFCIISFYLQSS--KDGPKELKVK 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,972
Number of Sequences: 5004
Number of extensions: 36809
Number of successful extensions: 159
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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