Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30a09
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315...    40   0.002
12_02_1093 + 26023692-26023865,26023959-26024026,26024155-260241...    29   2.6  
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340...    29   2.6  
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875...    29   4.6  
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337...    28   6.0  
07_03_1462 + 26716197-26716484,26716618-26716746,26716963-267170...    28   6.0  
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    28   8.0  
10_08_0954 + 21779561-21779639,21779780-21779862,21786887-217869...    28   8.0  

>01_03_0232 +
           14030821-14030904,14031029-14031374,14031475-14031599,
           14031927-14032023,14032459-14032691,14032765-14032885,
           14033319-14033374,14033630-14033703,14034193-14034239,
           14034458-14034507,14034860-14034922,14035160-14035240,
           14035517-14035627,14035714-14035789,14036216-14036358,
           14036775-14036848,14037304-14037409,14037492-14037547,
           14038272-14038378,14041150-14041598
          Length = 832

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +3

Query: 135 KMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHTDI--NFEFDEMDSDGVFEDE 308
           +++V ELR EL+ RGL  +G+K  L+ RL AAI  ++E          +E D+ GV + E
Sbjct: 4   RLRVEELRAELQRRGLDASGNKPVLVRRLDAAIRKEEEEEAAVSAAAKEEADAGGVVDGE 63


>12_02_1093 +
           26023692-26023865,26023959-26024026,26024155-26024198,
           26024287-26025035,26025506-26025595,26026174-26026235,
           26026360-26026465
          Length = 430

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 381 EQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQIN 560
           E   TA +  E    +  K+K  ++TK   AEN  A+   + +PS  + V +K    +  
Sbjct: 94  EHEKTAAVVAEDAGKK--KKKKGSDTKVSEAENKVAEPSAVEKPSENADVETKEKKQKKK 151

Query: 561 EKSVE 575
            K  E
Sbjct: 152 SKKQE 156


>12_01_0433 -
           3402250-3402536,3402644-3403030,3403523-3403957,
           3404071-3404562,3404718-3404821,3404913-3404994,
           3405085-3405441,3405532-3406089,3406376-3406479,
           3406575-3406650,3406764-3406898,3407192-3407494,
           3407581-3408345,3409459-3412591,3412763-3412882
          Length = 2445

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +3

Query: 126 DVTKMKVVELRKELKSRGLSYAGDKAELIARLQAAI 233
           D   MK  EL+   K  GLS  G  A L+ARL A +
Sbjct: 4   DFESMKRRELQALCKRHGLSAGGSNAALVARLAATL 39


>01_06_0880 +
           32687018-32687060,32687142-32687219,32687323-32687532,
           32687868-32689744
          Length = 735

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 96  LITMADSTVSDVTKMKVVELRK-ELKSRGLSYAGDKAELIARLQAAIISQDEHTD 257
           +++   S+++D +    +EL K EL  RG   AG+ ++ + R +     +  HTD
Sbjct: 330 VVSKFQSSLTDTSATDAIELEKHELNKRGDDVAGEISDSLTRTEEHNAIERTHTD 384


>11_01_0442 -
           3369827-3370168,3370608-3372616,3372953-3373277,
           3373386-3373415
          Length = 901

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 375 LSEQSSTATIAVETKSTRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQ 554
           LSE+ ++A + +  K     +    AE      E A A+   L R    S   + ++DDQ
Sbjct: 88  LSEKLASALLTINAKDDLVKQHTKVAEEAVAGWEQAEAEVSTLKRLLEASTQKNASLDDQ 147

Query: 555 IN 560
           +N
Sbjct: 148 VN 149


>07_03_1462 +
           26716197-26716484,26716618-26716746,26716963-26717055,
           26717581-26717721,26718021-26718089,26718207-26718290,
           26718784-26718964,26719055-26719171,26719245-26719303,
           26719595-26719729,26719865-26720014,26720170-26720208
          Length = 494

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 4/176 (2%)
 Frame = +3

Query: 135 KMKVVELRKELKSRGLSYAGDKAELIARLQAAIISQDEHT-DINFEFDEMDSD--GVFED 305
           ++ V EL  + + +GL+ A   +  +   QAA++ +D    ++    + + S   G  +D
Sbjct: 73  RLSVRELAMKFE-KGLNTATLLSNEVKWRQAALLERDILLKNLKSVLESLRSRVAGKHKD 131

Query: 306 EEVKSQXXXXXXXXXXXXNEDLVLSEQSSTATIAVETK-STRTLKRKTNAETKDKSAENA 482
           E  +S              ED +L +++  A IA   K ++   +R    E  +   E  
Sbjct: 132 EIEESLSMVDVLTVQLSKREDELLQQKAEVAKIATSLKLASEDARRIVEEERSNARIEID 191

Query: 483 SAKKIVLNRPSSISLVSSKTVDDQINEKSVEPKTASESNNVIKINTDLDPKKRLEL 650
           +A+  V        LV  + +D QIN K  E +   ++    ++     P K +++
Sbjct: 192 NARAAVQKVEQ---LVKEQEIDPQINGKQDEDELKEKAQEARRVKMLHCPSKAMDI 244


>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 423 TRTLKRKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSVEPKTASESNN 602
           T+T+K    A +   S  N  + KIV   P + ++ ++K + D I+    +P +  E   
Sbjct: 298 TKTIKNMLAAPSSPSSPANGGSIKIVQMTPVTSAMTTAKWLRDVISSLPDKPSSKLE-EF 356

Query: 603 VIKINTDL--DPKKRLEL 650
           +   +TDL  D  KR+ +
Sbjct: 357 LSSCDTDLTSDVVKRVSI 374


>10_08_0954 +
           21779561-21779639,21779780-21779862,21786887-21786946,
           21786980-21787169,21787250-21787302,21787523-21787603,
           21787703-21787819
          Length = 220

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 162 ELKSRGLSYAGDKAELIARLQAAIISQDEHTDINFEFDEMDSDGVFEDEEVK 317
           ++K RG+   GD    +      I   +E  D +F+  +MD+ G  E +EVK
Sbjct: 107 DVKKRGVIDFGDFVRALNVFHPNI-PMEEKIDFSFKLYDMDNTGFIERKEVK 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,774
Number of Sequences: 37544
Number of extensions: 196281
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)