Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30a09
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 546 DDQINEKSVEPKTASESNNVIKINTDLD 629
           DD+ NE+  + +  SE+   +K++ D D
Sbjct: 282 DDEENEEEEDGRGQSEAEKRLKLDEDAD 309


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 567 SVEPKTASESNNVIKINTDLDPKKRLELRAK 659
           S EP +A   NNV  +   +DP   + L  +
Sbjct: 105 SNEPSSAITGNNVKDVLVSIDPSGMVRLNTR 135


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 438 RKTNAETKDKSAENASAKKIVLNRPSSISLVSSKTVDDQINEKSVEPKTASESNN 602
           RK    +K++S +    ++     P  IS +S+KT+ +  N  +      + +NN
Sbjct: 57  RKYRERSKERSRDRTERERS--REPKIISSLSNKTIHNNNNYNNNNYNNYNYNNN 109


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 465 KSAENASAKKIVLNRPSSIS 524
           K A + +A+ IVLN P  IS
Sbjct: 335 KGAADFTAQVIVLNHPGQIS 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,852
Number of Sequences: 438
Number of extensions: 2470
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)