Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30a08
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 136 1e-32
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 136 1e-32
09_06_0240 + 21797458-21799369,21799636-21799784 31 0.59
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224... 29 2.4
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 29 3.1
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 29 4.1
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 29 4.1
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 28 7.2
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 28 7.2
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853... 28 7.2
04_04_0205 + 23591720-23591848,23592640-23592740,23592829-23593222 27 9.6
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 136 bits (330), Expect = 1e-32
Identities = 62/141 (43%), Positives = 89/141 (63%), Gaps = 6/141 (4%)
Frame = +1
Query: 214 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDNV 393
+PD VK F+ + + + YEI +YE F L+++ F + PWP + VSP D D+V
Sbjct: 22 VPDSVKTFVAHMYRHVRDKNVYEIHQMYEGGFQRLSDRLFRDAPWPAAEAVSPYCDGDHV 81
Query: 394 FMILYKELYYRDIYARVPGGPKPE------QRFHSFYNYCDLFNYILSVTPVPLELPDQW 555
F++LY+EL+YR YAR QR S+ NYCDLF+ +L V ++LP+QW
Sbjct: 82 FLLLYRELWYRHAYARASSSSSSSAPLTAGQRAESWANYCDLFSVVLHGV-VNMQLPNQW 140
Query: 556 LWELIDEFVYQFQSFAQYRSR 618
LW+++DEFVYQFQSF QYR++
Sbjct: 141 LWDMVDEFVYQFQSFCQYRAK 161
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 136 bits (329), Expect = 1e-32
Identities = 61/135 (45%), Positives = 91/135 (67%)
Frame = +1
Query: 214 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDNV 393
+PD VK F+ + I + YE +YE F L++++F +TPWP + V+ D D+V
Sbjct: 9 VPDSVKTFVSHLYRHIRDRNVYETHQMYEGGFTRLSDRHFRDTPWPPAEAVAAHCDGDHV 68
Query: 394 FMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDLFNYILSVTPVPLELPDQWLWELID 573
F++LY+EL++R +ARV G P QR S+ NYC LF+ +L V ++LP+QWLW+++D
Sbjct: 69 FLLLYRELWFRHAHARVQ-GLTPAQRAESWDNYCSLFSVVLQGV-VNMQLPNQWLWDMVD 126
Query: 574 EFVYQFQSFAQYRSR 618
EFVYQFQSF QYR++
Sbjct: 127 EFVYQFQSFCQYRAK 141
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 31.5 bits (68), Expect = 0.59
Identities = 22/91 (24%), Positives = 41/91 (45%)
Frame = +1
Query: 115 DDYNEGGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNL 294
DD N G E + + ST + DRS+ + D + +F F+N + + E L+L
Sbjct: 318 DDTNSGPLERNVNSDNGSTRSNRQDEDRSTVTCIDDWIVQFARLFKNHVGVS-SDEYLDL 376
Query: 295 YENTFPTLTEKYFENTPWPDEDEVSPIVDND 387
+E + TE + + EV + +++
Sbjct: 377 HEVSMKLYTEAIEDTITTEEAQEVFQLAESN 407
>03_01_0289 +
2242584-2242931,2242973-2243005,2244158-2244241,
2244640-2245782
Length = 535
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -2
Query: 226 PCQAFYNKKT-----CHIPARSVLWTVLHSRHRIRNLPHYNRR 113
PC AF+ K T CH ++ WT + + +NLP NRR
Sbjct: 166 PC-AFWGKGTEPTDHCHATDKNAKWTKMRQSLKRKNLPSSNRR 207
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 321 SECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRHFII 205
S G+ + +VQD IC+ NH K ++ F D + +I
Sbjct: 419 SSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLI 457
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 154 YEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRN-MINEGVTY--EILNLYENTFPTLTE 324
Y + YEPE Y+M L++ ++ G Y EI +EN FP LTE
Sbjct: 157 YSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKYRKEIYAAFENMFPVLTE 216
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 97 TTMYSSDDYNEGG---YESYGDYEAQSTEHYEPEYDRS 201
+T S YN+ G Y S G Y ST++YE Y++S
Sbjct: 880 STDNSESGYNKSGTGEYGSGGGYNKSSTDNYESGYNKS 917
>06_03_1445 - 30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 27.9 bits (59), Expect = 7.2
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = +1
Query: 133 GYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFP 312
G+E G Y + E R Y + V+ +VY R++ + G N+ + F
Sbjct: 852 GHE-LGGYVGNDGGNEECPEQREEYEPFENSVEDGMVYLRHVRHHGWKGSKDNMGKQQFL 910
Query: 313 TLTEKYFENTPWPDEDEVSP-IVDNDNVFMILYKELYYRDIYARVPG 450
L++ N+ DE+ P +V+ + Y +Y +DIY RV G
Sbjct: 911 RLSDLELVNS--NSLDEILPAMVECLILHKDDYHHMYDKDIYDRVLG 955
>06_03_1433 - 30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.9 bits (59), Expect = 7.2
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = +1
Query: 133 GYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFP 312
G+E G Y + E R Y + V+ +VY R++ + G N+ + F
Sbjct: 852 GHE-LGGYVGNDGGNEECPEQREEYEPFENSVEDGMVYLRHVRHHGWKGSKDNMGKQQFL 910
Query: 313 TLTEKYFENTPWPDEDEVSP-IVDNDNVFMILYKELYYRDIYARVPG 450
L++ N+ DE+ P +V+ + Y +Y +DIY RV G
Sbjct: 911 RLSDLELVNS--NSLDEILPAMVECLILHKDDYHHMYDKDIYDRVLG 955
>02_04_0191 -
20783143-20784365,20784453-20784597,20784977-20785345,
20786164-20786250,20786405-20786603,20786733-20786818
Length = 702
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 319 TEKYFENTPWPDEDEVSPIVDNDNVFMILYKELYYRDIYARVPGGPKPEQ 468
T+K TP + I DN N F + ++L+ D+ PK E+
Sbjct: 495 TKKALNTTPVSGSSDKMEIDDNSNYFAVTMEDLFPEDVKQEDVQDPKIEE 544
>04_04_0205 + 23591720-23591848,23592640-23592740,23592829-23593222
Length = 207
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 190 IPARSVLWTVLHSRHRIRNLPHYNRR 113
+P RSV+ TVLH+ + N H RR
Sbjct: 153 VPLRSVVTTVLHAEEKDVNKSHARRR 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,478
Number of Sequences: 37544
Number of extensions: 326254
Number of successful extensions: 836
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -