Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30a04
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 85 6e-18
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 83 2e-17
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 80 2e-16
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 79 5e-16
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 75 6e-15
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 73 2e-14
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 67 2e-12
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 66 4e-12
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 64 2e-11
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 62 8e-11
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 60 2e-10
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 53 3e-08
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 46 3e-06
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 27 2.0
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 27 2.7
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 6.2
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 6.2
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 6.2
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 25 8.3
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 25 8.3
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 8.3
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 8.3
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 8.3
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 85.4 bits (202), Expect = 6e-18
Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
+RL+ ELMSLM PG++ D S NL W + G T YEG KF + F YP
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDS-NLLHWAGTITGPSDTYYEGLKFKISMSFPANYP 89
Query: 218 FDSPEVTFIGNNIPV-HPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSMLSSCKEKRR 394
+ P + F P+ HP+V +G+ICL IL D WS +VQ++ LS+ S+L +
Sbjct: 90 YSPPTIIFTS---PMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLG--EPNNA 144
Query: 395 PPDNSFYVKTCNKNPKKTK 451
P N+ + +K+P + K
Sbjct: 145 SPLNAQAAELWSKDPIEYK 163
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 83.4 bits (197), Expect = 2e-17
Identities = 43/113 (38%), Positives = 66/113 (58%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
+R+ KE+ +L ++PPPG+ + NL + + MEG + YEG KF L+ ++YP
Sbjct: 5 KRIIKEIETLTRDPPPGIVAAPTE--DNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYP 62
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSMLSS 376
P V F+ HP+V G ICLS L DWSPAL +++V LSI +++ +
Sbjct: 63 MMPPNVRFLTKIY--HPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGA 113
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 80.2 bits (189), Expect = 2e-16
Identities = 43/112 (38%), Positives = 58/112 (51%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
+R+ +EL L K+PP + +L W + G + Y G F L F YP
Sbjct: 4 KRINRELADLGKDPPSSCSAG--PVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSMLS 373
F P+V F HP++ SNG ICL IL D WSPAL++ V LSI S+L+
Sbjct: 62 FKPPKVNFTTRIY--HPNINSNGSICLDILRDQWSPALTISKVLLSICSLLT 111
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 79.0 bits (186), Expect = 5e-16
Identities = 40/114 (35%), Positives = 60/114 (52%)
Frame = +2
Query: 32 SERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNK 211
+ RRL ++ + ++PP GV+ S N+ LW + G T +E F L F +
Sbjct: 5 ARRRLMRDFKRMQQDPPAGVSAS--PVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQ 62
Query: 212 YPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSMLS 373
YP P V F+ HP+VY+NG +CL IL + WSP V ++ SI S+L+
Sbjct: 63 YPNKPPLVKFVSTMF--HPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLN 114
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 75.4 bits (177), Expect = 6e-15
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Frame = +2
Query: 23 LSPSERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKF 202
++ S +RL KE S G+ + ++ W +EG T YEG ++VL
Sbjct: 1 MNSSIKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHV 60
Query: 203 TNKYPFDSPEVTFIGNNIPVHPHV-YSNGHICLSILTDDWSPALSVQSVCLSIVSMLSS 376
YP P V F VHP++ ++NG +C+ IL WSPA S+QS CL+I+S+LS+
Sbjct: 61 HEGYPISPPSVYF--QTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSN 117
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 73.3 bits (172), Expect = 2e-14
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 13/155 (8%)
Frame = +2
Query: 26 SPSERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFT 205
S SE+ L+K+L + K PP G +V G +++ W V + G TLYEG F F
Sbjct: 4 SASEQLLRKQLKEIQKNPPQGFSV-GLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFP 62
Query: 206 NKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSIL---TDD----------WSPALSVQSV 346
YP P++ F HP+V+ NG +C+SIL DD W P S +++
Sbjct: 63 QDYPLMPPKMKF--TTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETI 120
Query: 347 CLSIVSMLSSCKEKRRPPDNSFYVKTCNKNPKKTK 451
+S++SMLSS ++ P N K +NP++ K
Sbjct: 121 LISVISMLSSPNDE--SPANIDAAKEFRENPQEFK 153
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 67.3 bits (157), Expect = 2e-12
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
RRL KE L + P G+T G + W ++G GT +EG + KF + YP
Sbjct: 8 RRLMKEYKELTENGPDGITA-GPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYP 66
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSIL-------------TDDWSPALSVQSVCLSI 358
P + F HP+VY +G +C+SIL ++ WSP SV+ + LS+
Sbjct: 67 LGPPTLKFECEFF--HPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSV 124
Query: 359 VSMLS 373
+SML+
Sbjct: 125 MSMLA 129
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 66.1 bits (154), Expect = 4e-12
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Frame = +2
Query: 14 MAALSPSE-RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVL 190
MA+ SPS RRL KE L + P P + V+ NL W G ++Y G KF
Sbjct: 1 MASASPSSSRRLTKEYSDLREHPIPDIRVN--LVDDNLFHWACTALGPSDSVYAGGKFHF 58
Query: 191 QFKFTNKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTDD-WSPALSVQSVCLSIVSM 367
KF YPF P + F HP+ S G++CL+IL + P++ ++SV I+ +
Sbjct: 59 SLKFPLDYPFQPPTIEF--TTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQL 116
Query: 368 L 370
L
Sbjct: 117 L 117
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 63.7 bits (148), Expect = 2e-11
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
RR+ KEL + ++ G+ V + +++ G GT YEG FV+ + YP
Sbjct: 7 RRIAKELADVQQDKQAGIQVW--TINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYP 64
Query: 218 FDSPEVTFIGNNIPVHPHVYSN-GHICLSILTDDWSPALSVQSVCLSIVSMLSSCKEKRR 394
F P++ F + HP+V S G ICL IL D WSP +++S +S+ S+L + E
Sbjct: 65 FRPPKMNF--DTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCT-PEPSN 121
Query: 395 PPD 403
P D
Sbjct: 122 PQD 124
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 61.7 bits (143), Expect = 8e-11
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Frame = +2
Query: 41 RLQKELMSLMKEPPPGVTVDGDQASQ---NLTLWTVHMEGVPGTLYEGEKFVLQFKFTNK 211
RLQ+E ++ P G ++S +L W V + G P T +EG + L F +
Sbjct: 8 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 67
Query: 212 YPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTDD--WSPALSVQSVCLSIVSML 370
YP P+ F HP+VY +G +CLSIL ++ W PA++++ + L I +L
Sbjct: 68 YPTRPPKCRFTPPLF--HPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 120
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 60.5 bits (140), Expect = 2e-10
Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +2
Query: 17 AALSPSERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGT-LYEGEKFVLQ 193
+ +SP++ R+QK++ L E P ++ + L +H+E P Y+G KF +
Sbjct: 19 SGISPAQIRIQKDVTDL--EIPSTMSTSWPDP---IKLNVLHLEIRPDEGYYKGGKFKFR 73
Query: 194 FKFTNKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSI 358
+ + YP D P+V + N I HP++ G++CL+IL DW+P L++ S+ + +
Sbjct: 74 IQIDDNYPHDPPKVKCL-NKI-YHPNIDIEGNVCLNILRQDWNPVLNLNSILVGL 126
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 53.2 bits (122), Expect = 3e-08
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
+RL KE ++L K P VD A++N+ W + G P T YEG ++ F YP
Sbjct: 8 KRLMKEYLALQKNPVE--LVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYP 65
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSIL---TDDWSPALSVQSVCLSIVSMLSS 376
F P + I + +N +CLS W+P+ V ++ + +VS ++S
Sbjct: 66 FKPPAIRMITPS----GRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTS 117
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 46.4 bits (105), Expect = 3e-06
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Frame = +2
Query: 23 LSPSERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKF 202
+S RR++ ++M L+ VT+ D N+ + V G T Y G + + +
Sbjct: 1 MSSPRRRIETDVMKLLMSDYE-VTLVND----NMQEFYVRFHGPSETPYSGGIWKVHVEL 55
Query: 203 TNKYPFDSPEVTFIGNNIPVHPHVYS-NGHICLSILTDDWSPALSVQSV 346
++YP+ SP + F+ N I HP++ +G +CL ++ WSP + ++
Sbjct: 56 PSEYPWKSPSIGFV-NRI-FHPNIDELSGSVCLDVINQTWSPMFDMINI 102
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 27.1 bits (57), Expect = 2.0
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Frame = +2
Query: 122 LTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYPFDSPEVTFIGN-NIP--------VHPHV 274
L+ W + G +++E + L+ YP P VTF+ N+P V+PH
Sbjct: 38 LSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHK 97
Query: 275 YSNGHICLSILTDDWSPALSVQSVCLSIVSMLSSCKEKR--RPPDNSFY 415
CL W S+++V L + ++S ++ +PP+ S +
Sbjct: 98 ID----CLR----HWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 354 RSCRCSVAVRKRDDRLIIRSTLKPVIKILR 443
++C C ++ +K D+LI ST+K V I +
Sbjct: 43 KNCACVISQKKVPDKLIDASTVKHVFPITK 72
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 372 VAVRKRDDRLIIRSTLKPVIKILRKQNGGIMMIRCSK 482
V V++ D ++ R++ + VI++ +GGI M C K
Sbjct: 382 VHVQEDDKDIVSRTSWEEVIRMNTNVSGGIFMSTCYK 418
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 303 SSPTTGRRRCRCNQSASRSCRCS 371
SSP++ + C N++ +CRCS
Sbjct: 20 SSPSSNFKTCVSNENGCINCRCS 42
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 194 FKFTNKYPFDSPEVTFIGNNIPVHP 268
F+ N PFDS + G++IP+ P
Sbjct: 251 FRSANASPFDSCDSFHSGSSIPIEP 275
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSIL 307
F PE+T +G + VHP V + LSIL
Sbjct: 161 FRRPELTVVGEEVTVHP-VEERVPVPLSIL 189
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 365 MLSSCKEKRRPPDNSFYVKTCNKNPKKTKWWYHDDSV*Q 481
M +S ++ RPPD+S T + P + HD V Q
Sbjct: 1 MSNSLNDQTRPPDSSVVDSTSSNFPNASNDSVHDKPVKQ 39
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 563 RTVHPHYYNTYHILRFNHPCSIE*TAWLAT 474
++VH H+Y T+ + P S++ T W T
Sbjct: 251 KSVH-HFYGTFTLNNQKRPISVDHTLWANT 279
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 287 HICLSILTDDWSPALSVQSVCLSIVSMLSSCKEKRRPPDNSFYVKTCNKNPKKTKW 454
HI + WS A S +S ++V EK+ P D ++++ + K W
Sbjct: 104 HINADTVLPVWSEAFSPKSTLPNMVWRYIQGPEKKSPNDGLWFLEQMGNSIAKHLW 159
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 2 NFITMAALSPSERRLQKELMSLMKE 76
N I+ AL+P+E+ LQK + L+ E
Sbjct: 124 NTISSTALTPTEKILQKRIEDLLYE 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,155
Number of Sequences: 5004
Number of extensions: 49619
Number of successful extensions: 180
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -