Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30a04
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 215 2e-56
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 86 2e-17
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 86 2e-17
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 83 1e-16
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 83 1e-16
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 80 1e-15
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 75 4e-14
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 67 8e-12
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 58 6e-09
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 57 1e-08
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 55 3e-08
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 55 3e-08
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 52 3e-07
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 50 9e-07
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 50 1e-06
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 50 1e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 3e-05
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 45 5e-05
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 41 6e-04
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 41 8e-04
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 40 0.002
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 30 1.1
U28737-9|AAA68276.1| 345|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 29 3.3
Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z22181-3|CAA80181.3| 416|Caenorhabditis elegans Hypothetical pr... 28 5.7
U41535-4|AAB63407.1| 655|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF047665-1|AAP13766.1| 499|Caenorhabditis elegans Hypothetical ... 27 10.0
AC025724-4|AAP31423.1| 612|Caenorhabditis elegans Hypothetical ... 27 10.0
AC025724-3|AAG23379.2| 662|Caenorhabditis elegans Hypothetical ... 27 10.0
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 215 bits (525), Expect = 2e-56
Identities = 93/146 (63%), Positives = 112/146 (76%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
RRL KEL L E P G+ VD S +L W + + G GTLY GE F+LQF F +YP
Sbjct: 7 RRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGPQYP 66
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSMLSSCKEKRRP 397
F+SPEV F+G IP HPH+YSNGHICLSIL+DDW+PALSVQSVCLSI+SMLSS KEK+ P
Sbjct: 67 FNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSSSKEKKHP 126
Query: 398 PDNSFYVKTCNKNPKKTKWWYHDDSV 475
D++ YV+TC+KNP KT+WW+HDDSV
Sbjct: 127 IDDAIYVRTCSKNPSKTRWWFHDDSV 152
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/140 (34%), Positives = 71/140 (50%)
Frame = +2
Query: 26 SPSERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFT 205
+PS RRL ++ L ++PP GV+ G N+ W + G T +E F L +FT
Sbjct: 3 TPSRRRLMRDFKKLQEDPPAGVS--GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 206 NKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSMLSSCKE 385
+YP P V FI HP+VY++G ICL IL + WSP V ++ SI S+L +
Sbjct: 61 EEYPNKPPTVKFISKMF--HPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLD--EP 116
Query: 386 KRRPPDNSFYVKTCNKNPKK 445
P NS + +N ++
Sbjct: 117 NPNSPANSLAAQLYQENRRE 136
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/140 (34%), Positives = 71/140 (50%)
Frame = +2
Query: 26 SPSERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFT 205
+PS RRL ++ L ++PP GV+ G N+ W + G T +E F L +FT
Sbjct: 3 TPSRRRLMRDFKKLQEDPPAGVS--GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 206 NKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSMLSSCKE 385
+YP P V FI HP+VY++G ICL IL + WSP V ++ SI S+L +
Sbjct: 61 EEYPNKPPTVKFISKMF--HPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLD--EP 116
Query: 386 KRRPPDNSFYVKTCNKNPKK 445
P NS + +N ++
Sbjct: 117 NPNSPANSLAAQLYQENRRE 136
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 83.0 bits (196), Expect = 1e-16
Identities = 44/111 (39%), Positives = 58/111 (52%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
+R+QKEL L ++PP +L W + G P + Y+G F L F YP
Sbjct: 4 KRIQKELQDLGRDPP--AQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSML 370
F P+V F HP++ SNG ICL IL WSPAL++ V LSI S+L
Sbjct: 62 FKPPKVAFTTRIY--HPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 83.0 bits (196), Expect = 1e-16
Identities = 44/111 (39%), Positives = 58/111 (52%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
+R+QKEL L ++PP +L W + G P + Y+G F L F YP
Sbjct: 4 KRIQKELQDLGRDPP--AQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSML 370
F P+V F HP++ SNG ICL IL WSPAL++ V LSI S+L
Sbjct: 62 FKPPKVAFTTRIY--HPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 80.2 bits (189), Expect = 1e-15
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 13/125 (10%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
R L EL +L +P G T+D ++ NL +WTV + G P TLY+G F +F + YP
Sbjct: 13 RALTMELKNLQSQPVEGFTIDVNE--DNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYP 70
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSIL---TDD----------WSPALSVQSVCLSI 358
+ P + F HP+VY NG +C+SIL DD W+P SV+++ LS+
Sbjct: 71 YSPPSMKF--TTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSV 128
Query: 359 VSMLS 373
+S+L+
Sbjct: 129 ISLLN 133
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 74.9 bits (176), Expect = 4e-14
Identities = 40/113 (35%), Positives = 65/113 (57%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
RR+ KE L+ +P PG++ + D++ N + V + G + + G F L+ +YP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDES--NARYFHVMIAGPDDSPFAGGVFKLELFLPEEYP 64
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSILTDDWSPALSVQSVCLSIVSMLSS 376
+P+V F+ HP++ G ICL IL D WSPAL +++V LSI ++LS+
Sbjct: 65 MAAPKVRFMTKIY--HPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 115
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 67.3 bits (157), Expect = 8e-12
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Frame = +2
Query: 41 RLQKELMSLMKEPPPGVT-VDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
RLQ+E ++ T + + ++NLT H+ G P T Y G F L K ++YP
Sbjct: 8 RLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYP 67
Query: 218 FDSPEVTFIGNNIPVHPHVYS-NGHICLSILTDDWSPALSVQSVCLSIVSMLSSCKEKRR 394
F P V F + HP+V S G ICL IL D W+ +L++++V LSI +++ C + +
Sbjct: 68 FSPPNVKF--STKIWHPNVSSQTGVICLDILKDQWAASLTLRTVLLSIQALM--CTPEPK 123
Query: 395 PPDNSFYVKTCNKNP 439
P ++ K + P
Sbjct: 124 DPQDAVVAKQYMEKP 138
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 57.6 bits (133), Expect = 6e-09
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Frame = +2
Query: 23 LSPSERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKF 202
+ S L+K+L + + P G + G ++ W V + G P TLYEG F F
Sbjct: 1 MEQSSLLLKKQLADMRRVPVDGFSA-GLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDF 59
Query: 203 TNKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTDD-------------WSPALSVQS 343
YP P++ FI HP++ G++C+SIL D W P +V++
Sbjct: 60 PRDYPQKPPKMKFISE--IWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVET 117
Query: 344 VCLSIVSMLS 373
+ LS++SML+
Sbjct: 118 ILLSVISMLT 127
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 56.8 bits (131), Expect = 1e-08
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
+RL E L PP G+ + N W + G T + F + F YP
Sbjct: 7 KRLMTEYKELTTRPPEGI-IAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDYP 65
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSIL---TDD----------WSPALSVQSVCLSI 358
P++ F HP++Y++G +C+SIL DD WSP S++ + LS+
Sbjct: 66 LSPPKMRFTCGIF--HPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSV 123
Query: 359 VSMLS 373
VSML+
Sbjct: 124 VSMLA 128
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 55.2 bits (127), Expect = 3e-08
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Frame = +2
Query: 41 RLQKELMSLMKEPPPGVT---VDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNK 211
RL +E K+ P G V + NL W + G T++EG + ++ F +
Sbjct: 8 RLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDD 67
Query: 212 YPFDSPEVTFIGNNIPV-HPHVYSNGHICLSILTD--DWSPALSVQSVCLSIVSMLS 373
+P P+ F P+ HP+VY +G +CLS+L + DW P++S++ + + I +L+
Sbjct: 68 FPSTPPKCKF---EPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLN 121
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 55.2 bits (127), Expect = 3e-08
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Frame = +2
Query: 41 RLQKELMSLMKEPPPGVT---VDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNK 211
RL +E K+ P G V + NL W + G T++EG + ++ F +
Sbjct: 8 RLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRMLFKDD 67
Query: 212 YPFDSPEVTFIGNNIPV-HPHVYSNGHICLSILTD--DWSPALSVQSVCLSIVSMLS 373
+P P+ F P+ HP+VY +G +CLS+L + DW P++S++ + + I +L+
Sbjct: 68 FPSTPPKCKF---EPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLN 121
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 52.0 bits (119), Expect = 3e-07
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
+RL+K+ L+KEP P + N+ W + G P T YEG ++ + F +P
Sbjct: 11 QRLKKDYQRLLKEPVP--FMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFP 68
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSIL---TDDWSPALSVQSVCLSIVSMLS 373
F P + + N +N +CLSI D W+PA +V ++ ++S ++
Sbjct: 69 FKPPAILMLTPN----GRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMN 119
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 50.4 bits (115), Expect = 9e-07
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTL-YEGEKFVLQFKFTNKY 214
RRLQKEL L K + + NL WTV + +P Y F + F Y
Sbjct: 5 RRLQKELGDL-KNCGVKAYENVECEETNLLKWTVLL--IPDKEPYNKGAFKVGITFPVDY 61
Query: 215 PFDSPEVTFIGNNIPVHPHVYSNGHICLSILT-DDWSPALSVQSVCLSIVSMLS 373
PF P+V F HP+V G CL I+T ++W PA + V ++++S+++
Sbjct: 62 PFKPPKVAF--ETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLIN 113
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 50.0 bits (114), Expect = 1e-06
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Frame = +2
Query: 143 MEGVPGTLYEGEKFVLQFKFTNKYPFDSPEVTFIGNNIPV-------------HPHVYSN 283
++G GT Y G F ++ YPF+ P+VT I +I HP++ S
Sbjct: 57 IKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQ 116
Query: 284 -GHICLSILTDDWSPALSVQSVCLSIVSMLSSCKEKRRPPDNSFYVKTCNKNPKKT 448
G ICL IL D W+ +L++++V LS+ +ML S E P D + N P T
Sbjct: 117 TGTICLDILKDKWTASLTLRTVLLSLQAMLCS-PEPSDPQDAVVAKQFINNYPMFT 171
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = +2
Query: 20 ALSPSERRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFK 199
A S + RRLQK+ LM++P G+ ++ N+ W + G P T + G + +
Sbjct: 16 ASSSAVRRLQKDYAKLMQDPVDGIKALPNE--DNILEWHYCLRGSPDTPFYGGYYWGKVI 73
Query: 200 FTNKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSIL---TDDWSPALSVQSVCLSIVSML 370
F +P+ P +T I N +N +CLSI + W+P +V ++ + + S +
Sbjct: 74 FKENFPWSPPAITMITPN----GRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFM 129
Query: 371 S 373
+
Sbjct: 130 N 130
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 45.6 bits (103), Expect = 3e-05
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Frame = +2
Query: 38 RRLQKELMSLMKEPP----PGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFT 205
+R+ KEL S+ P + V D+ ++ V + G T Y F F
Sbjct: 412 KRIAKELASIANALPLNASNSIYVCYDEGRVDII--KVLISGPDDTPYANGLFEFDIFFP 469
Query: 206 NKYPFDSPEVTFI---GNNIPVHPHVYSNGHICLSIL-------TDDWSPALSVQSVCLS 355
YPF P+ F+ N+ +P++Y++G ICLSIL + W+P S+ V +S
Sbjct: 470 TGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVS 529
Query: 356 IVSML 370
I ++
Sbjct: 530 IQEVI 534
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 44.8 bits (101), Expect = 5e-05
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 143 MEGVPGTLYEGEKFVLQFKFTNKYPFDSPEVTFIGNNIPVHPHVYS-NGHICLSILTDD- 316
++GV T YEG F L K YPF +P V FI HP V +G ICL + +
Sbjct: 385 IKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITK--IWHPSVSPFDGTICLHDVDNGV 442
Query: 317 WSPALSVQSVCLSIVSMLSSCKEK 388
W ++++ V + I S +S+ EK
Sbjct: 443 WPVSMTIYKVLIVIQSWMSNFNEK 466
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 137 VHMEGVPGTLYEGEKFVLQFKFTNKYPFDSPEVTFIGNNIPVHPHV-YSNGHICLSILTD 313
V G T YE + ++ +KYPF SP + F+ N I HP++ ++G +CL ++
Sbjct: 37 VRFHGPKDTAYENGVWRIRVDMPDKYPFKSPSIGFL-NKI-FHPNIDEASGTVCLDVINQ 94
Query: 314 DWSPALSVQSV 346
W+ + ++
Sbjct: 95 AWTALYDLTNI 105
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 40.7 bits (91), Expect = 8e-04
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 217
RRL KE M L + P NL W + G GT +EG + + F YP
Sbjct: 13 RRLMKEAMELRQ---PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYP 69
Query: 218 FDSPEVTFIGNNIPVHPHVYSNGHICLSIL---TDDWSPALSVQSVCLSIVSMLSS 376
P + + N N +CLSI + W P+ S+++ L+++ L S
Sbjct: 70 MKPPNLILLTPN----GRFELNKKVCLSISGYHPETWLPSWSIRTALLALIGFLPS 121
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 40.3 bits (90), Expect = 0.001
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Frame = +2
Query: 29 PSERRLQKELMSLMKEPPPGVTVDG--DQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKF 202
P RL +EL K G G D + LT WT + G P T YE + LQ +
Sbjct: 5 PRNFRLLEELEEGQKGKGDGNISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQIQC 64
Query: 203 TNKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTD--DWSPALSVQSVCLSIVSMLSS 376
YP + P V F + + SNG I LT +WS + +++V I +
Sbjct: 65 GGNYPREPPTVRFT-TKVHMVGVNQSNGVIDKRNLTTLRNWSNSYMIKTVLEDIRKNMMM 123
Query: 377 CKE 385
KE
Sbjct: 124 AKE 126
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 176 EKFVLQFKFTNKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILT-DDWSPALSVQSVCL 352
+ + F F K+P D P V + +I V G IC+ +LT WS A S++S L
Sbjct: 277 DHLLFSFTFNEKFPCDPPFVRVVAPHIN-QGFVLGGGAICMELLTKQGWSSAYSIESCIL 335
Query: 353 SIVSML 370
I + L
Sbjct: 336 QIAATL 341
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 176 EKFVLQFKFTNKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILT-DDWSPALSVQSVCL 352
+ + F F K+P D P V + +I V G IC+ +LT WS A S++S L
Sbjct: 277 DHLLFSFTFNEKFPCDPPFVRVVAPHIN-QGFVLGGGAICMELLTKQGWSSAYSIESCIL 335
Query: 353 SIVSML 370
I + L
Sbjct: 336 QIAATL 341
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 158 GTLYEGEKFVLQFKFTNKYPFDSPEVTFIGNNIPVHPHVYS-NGHICL-SILTDDWSPAL 331
G LY+ F L +YPF P + F N HP+V +C +L ++W P
Sbjct: 54 GVLYKNMIFTLTLDVNVEYPFKPPYLKFCHN--VYHPNVDPVTCELCSPMLLQENWKPET 111
Query: 332 SVQSVCLSIVSMLS 373
+++ V L+++ +L+
Sbjct: 112 TMEDVLLNLIVLLN 125
>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
protein C04H5.3 protein.
Length = 1034
Score = 31.9 bits (69), Expect = 0.35
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +2
Query: 83 PGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYPFDSPEVTFIGNNIPV 262
P + V ++ S+ L LW G + EKF + KF + D +T +
Sbjct: 540 PFIGVSFNEKSELLLLWKFCSRGTLQDVIYCEKFAMDEKFQGAFVRD---ITMGLEYLHS 596
Query: 263 HPHVYSNGHICLSILTD-DWSPALSVQSVC 349
P Y G C S+L D +W L+ +VC
Sbjct: 597 SPIGYHGGLACWSVLIDKNWMLKLTDYAVC 626
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 336 CNQSASRSCRCSVAVRKRDDRLIIRSTLKPVIKILRKQNGGIMMIRCSKPCGS 494
CN+S SR C+ + + + ++ LK IK+L +G M CS C S
Sbjct: 123 CNRSCSRVCQSNPSASSSQSQTTTQTPLKVSIKVL--DDGAKCMSTCSDTCRS 173
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = +2
Query: 164 LYEGEKFVLQFKFTNKYPFDS-PEVTFIGNNIPVHPHVYSNGHICLSILTDD------WS 322
+Y G KF +FK T +++ P V + HP++ +G ICLSIL + W
Sbjct: 71 IYRGGKF--RFKITVPPEYNNVPPVVKCLTKV-WHPNINEDGSICLSILRQNSLDQYGWR 127
Query: 323 PALSVQSVCLSIVSMLS 373
P ++ V +VS+ +
Sbjct: 128 PTRNLTDVVHGLVSLFN 144
>U28737-9|AAA68276.1| 345|Caenorhabditis elegans Hypothetical
protein F14B8.6 protein.
Length = 345
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +2
Query: 308 TDDWSPALSVQSVCLSIVSMLSSCKEKRRPPDNSFYVKTCNKNPKKT 448
T+ W+ ++ C +C E+ +N +Y TC N +KT
Sbjct: 141 TNQWTLTATINRKCNGADQYGFNCNEQCSTVNNDYYCYTCGSNGQKT 187
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 38 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVL 190
+R+QKEL L ++PP + +L W + G P + Y+G F L
Sbjct: 4 KRIQKELHDLGRDPPAQCST--GSVGDDLYHWQATIMGPPESPYQGGIFFL 52
>Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical
protein K09E4.2 protein.
Length = 640
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 481 LLHRIIMIPPFCFLRIFITGFNVERI 404
+LH+ + IPP L + ITG+ + I
Sbjct: 121 ILHKTMRIPPIVLLLVSITGYRIHSI 146
>Z22181-3|CAA80181.3| 416|Caenorhabditis elegans Hypothetical
protein ZK632.4 protein.
Length = 416
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 161 TLYEGEKFVLQFKFTNKYPFDSPEVTFIGNNIPVHPHVYSNGHICLSILTD 313
TLY G+ V F N + E TF+ N+ PH Y G C+ + D
Sbjct: 226 TLYPGDVGVFAPIFLNYFKLQPGEATFLEPNM---PHAYLKGD-CVECMAD 272
>U41535-4|AAB63407.1| 655|Caenorhabditis elegans Hypothetical
protein F18A1.5 protein.
Length = 655
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 377 CKEKRRPPDNSFYVKTCNKNPKKTKWWY 460
C++K + + + CNKN K KW Y
Sbjct: 523 CQKKLVGENGDYRCEKCNKNMNKFKWLY 550
>AF047665-1|AAP13766.1| 499|Caenorhabditis elegans Hypothetical
protein T23E1.2 protein.
Length = 499
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 263 HPHVYSNGHICL--SILTDDWSPALSVQSVCLSIVSMLSSC 379
HP VY+ L S +T D PAL V+S LS + LS+C
Sbjct: 147 HPEVYTKFRKMLIESKITTD-IPALDVESDWLSTLQFLSTC 186
>AC025724-4|AAP31423.1| 612|Caenorhabditis elegans Hypothetical
protein Y67D8C.3b protein.
Length = 612
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 263 HPHVYSNGHICL--SILTDDWSPALSVQSVCLSIVSMLSSC 379
HP VY+ L S +T D PAL V+S LS + LS+C
Sbjct: 269 HPEVYTKFRKMLIESKITTD-IPALDVESDWLSTLQFLSTC 308
>AC025724-3|AAG23379.2| 662|Caenorhabditis elegans Hypothetical
protein Y67D8C.3a protein.
Length = 662
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 263 HPHVYSNGHICL--SILTDDWSPALSVQSVCLSIVSMLSSC 379
HP VY+ L S +T D PAL V+S LS + LS+C
Sbjct: 319 HPEVYTKFRKMLIESKITTD-IPALDVESDWLSTLQFLSTC 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,858,463
Number of Sequences: 27780
Number of extensions: 297996
Number of successful extensions: 916
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -