Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30a03
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...   161   1e-40
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    97   2e-21
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    57   2e-09
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    35   0.011
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    32   0.076
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    29   0.54 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.8  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    26   3.8  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.0  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.0  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   6.6  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   6.6  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score =  161 bits (390), Expect = 1e-40
 Identities = 84/195 (43%), Positives = 116/195 (59%), Gaps = 2/195 (1%)
 Frame = +2

Query: 38  EMADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEET 217
           E   E  V+ +++    V KYK+AG++   V+++V+  C P A   +IC  GD+L+ E  
Sbjct: 5   EATSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAI 64

Query: 218 NKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPD--YILKKGDLAKIDLGAHIDGFI 391
            KV++  KD+ KGIAF T VS N+   H SP+ S+P+    LK GD+ KI LGAHIDGF 
Sbjct: 65  KKVYRT-KDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFA 123

Query: 392 AVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPGTENYAVTEAIQKISAEYGCKP 571
           ++VA T VV E  V+G AADV               KPG  N+ VT+ + KI+  YGCKP
Sbjct: 124 SLVATTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYGCKP 183

Query: 572 IEGMLSXQLKQFRID 616
           + GMLS Q ++  ID
Sbjct: 184 VAGMLSHQQEREVID 198


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
 Frame = +2

Query: 47  DEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKV 226
           D  +    + +    +KY+ AG +V++   QV ++CVP AS REI  +GD L+ E  + +
Sbjct: 4   DPSDSNSRVVDASQFSKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSI 63

Query: 227 FKKEKDSKKGIAFSTCVSVNNCICHFSP------IASEPDYILKKGDLAKIDLGAHIDGF 388
           +K ++  +KGIA  T + VNNC  +++P        ++  Y L+ GD+ KI +G H DG+
Sbjct: 64  YKSQR-FEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGY 122

Query: 389 IAVVAHTVVV 418
            A+++HT+VV
Sbjct: 123 TALISHTIVV 132


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = +2

Query: 206 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDG 385
           +E T +   +E   K GI F T VS+N+C  H++P A +   ILK+ D+ K+D+G H++G
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNG 206

Query: 386 FIAVVAHTV 412
            I   A T+
Sbjct: 207 RIVDSAFTM 215


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +2

Query: 266 STCVSVNNCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVGE 424
           S C SVN  ICH  P    P   L+ GD+  ID+  + +GF   +  T  VG+
Sbjct: 181 SVCTSVNEIICHGIP-DQRP---LEDGDIVNIDVSLYHNGFHGDLNETYYVGD 229


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 571 WLTTIFSTYFLNGFSDCIVLSTR---LQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMS 401
           W++++     L G S  I LST    L + K+ +  M +     C  S  +T + N C +
Sbjct: 5   WVSSLLG---LLGLSTAIPLSTEADALLDRKTIYFGMKAYDDVNCKGSTSYTISFNKCQA 61

Query: 400 YNSYKSINVST 368
           Y +  SIN  T
Sbjct: 62  YPNINSINALT 72


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -1

Query: 350  NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 261
            +L+ S+C  V+ QW+  ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 153 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 248
           AF T +Q  Y N   NLY+   ++ S  R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 47  DEKEV-EKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPD 163
           D+K +  K I ++L V +   AG++++++ E    KC+P+
Sbjct: 16  DKKSIFMKQIRQELAVAQ---AGELISKINENCFDKCIPE 52


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 412 YCMSYNSYKSINVSTKIYLG*ISF 341
           YC    +YKS+ + T +Y+G   F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -1

Query: 578 PQLAYNHIQHLFSE---WLQ*LHSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFHPQLL 408
           P LAY  + + FS     +   +SS +      +P   ++ L ++ LQ   +LH+H  +L
Sbjct: 375 PSLAYLQVVYSFSMRALLVNRQYSSAFAFFWKIDPYIRNERLVSQMLQAASQLHYHDLIL 434

Query: 407 Y 405
           Y
Sbjct: 435 Y 435


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 202 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 98
           K + KF+   C  +++A C+D L  S H   C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 164 ASAREICEFGDKLVLEETNKVFKKEKD 244
           ++ +E   FG+KL  E T K+   EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 EPDYILKKGDLAKIDLGAHIDGFIAVVAHTVV 415
           EP+Y+L  G+L+  +L   ID F      T V
Sbjct: 382 EPEYLLMYGNLSNEELVERIDAFYMNARRTYV 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,195
Number of Sequences: 5004
Number of extensions: 46076
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)