Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30a01
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    69   8e-13
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   9.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.2  

>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 37/98 (37%), Positives = 52/98 (53%)
 Frame = +1

Query: 322 EQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYRTATAVVFWQWVNQ 501
           E V  AK++ +S  HPD+ E   +  RMS  +    ++T  MLQ        VFWQW+NQ
Sbjct: 62  ETVWHAKKIVDSTLHPDTKEPVFLPFRMSCFVLTNLVVTAGMLQPNLGTAGTVFWQWMNQ 121

Query: 502 SFNALVNYTNRNANSPLTTKQMAVAYVSATSAAMTTAL 615
           S N   N  N N ++ LT  QM  +Y+ A SA+   A+
Sbjct: 122 SVNVAFNSANANKSTQLTLPQMTKSYIYAVSASCGVAI 159


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 411 PNARRLSYYRCYVTVVQNSNSRSLLAMGEPVFQCSS 518
           PN R ++Y  C V  ++N      +   EP ++C+S
Sbjct: 335 PNCRHVTYSTCSVHRLENEQVVCEVLSQEPDWKCNS 370


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 293  QVVSSQGQN*SK*LRRNSFMNQHS 364
            QV+SSQ QN S+ L    F++ HS
Sbjct: 1863 QVISSQSQNISQLLNVYDFISSHS 1886


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,456
Number of Sequences: 5004
Number of extensions: 56371
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)