Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p22
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8N2G6 Cluster: Zinc finger CCHC domain-containing prot...    66   8e-10
UniRef50_UPI00003C0D2D Cluster: PREDICTED: similar to Y43E12A.2;...    65   1e-09
UniRef50_UPI00015B4A06 Cluster: PREDICTED: similar to LOC562028 ...    64   3e-09
UniRef50_Q7PCR0 Cluster: ENSANGP00000015723; n=2; Culicidae|Rep:...    64   5e-09
UniRef50_Q8WPM6 Cluster: Putative uncharacterized protein BAC001...    41   0.028
UniRef50_O45925 Cluster: Putative uncharacterized protein; n=2; ...    40   0.064
UniRef50_Q4S3G9 Cluster: Chromosome 2 SCAF14750, whole genome sh...    39   0.15 
UniRef50_Q7Q1J5 Cluster: ENSANGP00000014375; n=1; Anopheles gamb...    33   5.5  
UniRef50_Q1RLA3 Cluster: Zinc finger protein; n=1; Ciona intesti...    33   5.5  
UniRef50_Q8EYD7 Cluster: Putative uncharacterized protein; n=2; ...    33   7.3  
UniRef50_UPI0000D5558A Cluster: PREDICTED: similar to CG6383-PA;...    33   9.7  
UniRef50_Q4YV50 Cluster: Replication factor A-related protein, p...    33   9.7  
UniRef50_A0CJD4 Cluster: Chromosome undetermined scaffold_2, who...    33   9.7  

>UniRef50_Q8N2G6 Cluster: Zinc finger CCHC domain-containing protein
           C10orf56; n=25; Eumetazoa|Rep: Zinc finger CCHC
           domain-containing protein C10orf56 - Homo sapiens
           (Human)
          Length = 241

 Score = 66.1 bits (154), Expect = 8e-10
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
 Frame = +3

Query: 189 TPHSSGRNKPCFGKYICV-CGNAWSSRKSWPQKYQICTRCRKKVYARTQRPLRSSDWTN- 362
           TP+     K CFG+Y C  C   W S  SW    Q C +C   VY   QRPL   D  + 
Sbjct: 158 TPYQG--KKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDV 215

Query: 363 NKNSRDHLSNLCQMCQELGYDCGKL 437
           +  S++H  +LC+ C+ LGY C ++
Sbjct: 216 SDQSKEHPQHLCEKCKVLGYYCRRV 240


>UniRef50_UPI00003C0D2D Cluster: PREDICTED: similar to Y43E12A.2;
           n=2; Endopterygota|Rep: PREDICTED: similar to Y43E12A.2
           - Apis mellifera
          Length = 238

 Score = 65.3 bits (152), Expect = 1e-09
 Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +3

Query: 189 TPHSSGRNKPCFGKYICV-CGNAWSSRKSWPQKYQICTRCRKKVYARTQRPLRSSDWTN- 362
           TP+     K CFG+Y C  C   W S  SW    Q C +C   VY   QRPL   D  + 
Sbjct: 155 TPYQG--KKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDV 212

Query: 363 NKNSRDHLSNLCQMCQELGYDC 428
           +  S+ H  +LCQ C+ LGY C
Sbjct: 213 SDQSKVHPQHLCQKCKTLGYYC 234


>UniRef50_UPI00015B4A06 Cluster: PREDICTED: similar to LOC562028
           protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to LOC562028 protein - Nasonia vitripennis
          Length = 269

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +3

Query: 189 TPHSSGRNKPCFGKYICV-CGNAWSSRKSWPQKYQICTRCRKKVYARTQRPLRSSDWTN- 362
           TP+     K CFG+Y C  C   W S  SW    Q C +C   VY   QRPL   D  + 
Sbjct: 186 TPYQG--KKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDV 243

Query: 363 NKNSRDHLSNLCQMCQELGYDCGKL 437
           +  S+ H   LC+ C+ LGY C ++
Sbjct: 244 SDQSKVHPQQLCEKCKTLGYYCRRV 268


>UniRef50_Q7PCR0 Cluster: ENSANGP00000015723; n=2; Culicidae|Rep:
           ENSANGP00000015723 - Anopheles gambiae str. PEST
          Length = 130

 Score = 63.7 bits (148), Expect = 5e-09
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +3

Query: 189 TPHSSGRNKPCFGKYICV-CGNAWSSRKSWPQKYQICTRCRKKVYARTQRPLRSSDWTN- 362
           TP+     K CFG+Y C  C   W S  SW    Q C +C   VY   QRPL   D  + 
Sbjct: 47  TPYQG--KKRCFGEYKCPKCKRKWMSGNSWANHGQECIKCHINVYPHKQRPLEKPDGLDV 104

Query: 363 NKNSRDHLSNLCQMCQELGYDCGKL 437
           +  S+ H   LC+ C+ LGY C ++
Sbjct: 105 SDQSKVHPQMLCEKCKTLGYYCRRI 129


>UniRef50_Q8WPM6 Cluster: Putative uncharacterized protein BAC001.9;
           n=1; Oikopleura dioica|Rep: Putative uncharacterized
           protein BAC001.9 - Oikopleura dioica (Tunicate)
          Length = 302

 Score = 41.1 bits (92), Expect = 0.028
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 240 VCGNAWSSRKSWPQKYQICTRCRKKVYARTQRPLRSSDWTNNKNSRDHLSNLCQMCQELG 419
           +CGN W S  ++   +Q C +C  K        L+  D +N   ++ H   LCQ C E  
Sbjct: 58  ICGNEWFSGNAYFNTWQKCQKCHNKC---KPYYLKEHDESNGVVTKPHPDRLCQKCMEFK 114

Query: 420 YDCGKLF 440
            + G  F
Sbjct: 115 EETGNSF 121


>UniRef50_O45925 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 267

 Score = 39.9 bits (89), Expect = 0.064
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 165 YNSSKQTSTPHSSGRNKPCFGKYIC-VCGNAWSSRKSWPQKYQICTRCRKKVYARTQRPL 341
           +N+     TP+  GR K C+G++ C +C   W+S+ S   + Q C +C   V+   Q P+
Sbjct: 173 FNTPYDELTPYQ-GRKK-CYGEFTCQLCKRKWNSQNSVANEPQSCIKCHVPVFPHKQLPV 230

Query: 342 RSS 350
             +
Sbjct: 231 EKA 233


>UniRef50_Q4S3G9 Cluster: Chromosome 2 SCAF14750, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 2 SCAF14750, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 147

 Score = 38.7 bits (86), Expect = 0.15
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 189 TPHSSGRNKPCFGKYICV-CGNAWSSRKSWPQKYQICTRCRKKVYARTQ 332
           TP+     K CFG+Y C  C   W S  SW    Q C +C   VY   Q
Sbjct: 78  TPYQG--KKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQ 124


>UniRef50_Q7Q1J5 Cluster: ENSANGP00000014375; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000014375 - Anopheles gambiae
           str. PEST
          Length = 731

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
 Frame = +3

Query: 102 HCNRRAVNNLIVVNQVCE-----ICTYNSSKQTSTPHSSG-RNKPCFGKYICVCGNAWSS 263
           HC++  V+ + V   VC+     + + NS        S G  N  C     C C   + +
Sbjct: 313 HCSKPCVHGICVAPDVCDCKKGYVKSENSKNVCEPKCSKGCSNGRCVAPDHCECHKGYIA 372

Query: 264 RKSWPQKYQICT-RCRKK-VYARTQRPLRSSDWTNNKNSRDHLSNLCQ-MCQELGYDC 428
             +   K  ICT  C+ K V A   RP        ++ + D+ +N+C+ +C++   DC
Sbjct: 373 TSTANSKSSICTPYCKNKCVNAYCIRPNVCQCLAGHRFA-DNSTNVCEPICEDALVDC 429


>UniRef50_Q1RLA3 Cluster: Zinc finger protein; n=1; Ciona
           intestinalis|Rep: Zinc finger protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 359

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +3

Query: 150 CEICTY-NSSKQTSTPHSSGRNKPCFGKYICV-CGNAWSSR-------KSWPQKYQICTR 302
           C++CT  ++SK +   H   R+  CF KY+C  CG  + +R       +S   K  +C  
Sbjct: 247 CKVCTETHTSKISLAKHYKSRHPDCF-KYVCERCGALYMNRFSLTRHMRSHEHKEYVCIH 305

Query: 303 CRKKVYART 329
           C K  + ++
Sbjct: 306 CNKAFHRKS 314


>UniRef50_Q8EYD7 Cluster: Putative uncharacterized protein; n=2;
           Leptospira interrogans|Rep: Putative uncharacterized
           protein - Leptospira interrogans
          Length = 262

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = -1

Query: 468 KAVILYFRSQITFHNRIPILDTS-DTNYSDDLENSYYLSSQKNVRVFECERTPSSGIVYR 292
           K + LY+    T ++ +  +D + D N SD++E   +L +QK +  F   R P++     
Sbjct: 37  KRITLYY----TIYSYLEWIDNNVDNNLSDEVEVEKFLQNQKEILFF--NREPNN----E 86

Query: 291 FDIFGAMICDCSKHFRKHKCIYRS 220
           F+  G +I   SKH   +K +Y S
Sbjct: 87  FEYLGKLIF-LSKHSENYKPLYES 109


>UniRef50_UPI0000D5558A Cluster: PREDICTED: similar to CG6383-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG6383-PA - Tribolium castaneum
          Length = 2134

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -1

Query: 393 NYSDDLENSYYLSSQKNVRVFECERTPSSGIVYRFDIFGAMICDCSKHFRKHKCIYRSTA 214
           N++ D   + Y      + + ECE +P       FD +G  +C C   +    C     A
Sbjct: 294 NFTCDCSRTGYTGRFCQININECETSPCLNHGTCFDTYGGFLCQCPPGYGGAYCQNTLHA 353

Query: 213 CS 208
           CS
Sbjct: 354 CS 355


>UniRef50_Q4YV50 Cluster: Replication factor A-related protein,
           putative; n=6; Plasmodium|Rep: Replication factor
           A-related protein, putative - Plasmodium berghei
          Length = 514

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 255 WSSRKSWPQ-KYQICTRCRKKVYARTQRPLRSSDWTN-NKNSRDHLSNLCQMCQE 413
           W S+++  +  Y  CT+C+KK+ +  Q   +  D+ N N N+ ++    C  C E
Sbjct: 329 WKSKENEHRFYYPACTKCKKKLLSSGQDSAQGVDYDNSNFNNEENCVYSCMNCDE 383


>UniRef50_A0CJD4 Cluster: Chromosome undetermined scaffold_2, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_2, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2457

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
 Frame = +3

Query: 51   NMGCFWSSECDSRERCQHCNRRAVNNLIVVNQ-VCEI-----CTYNSSKQTSTPHSSGRN 212
            N GC+W+S  +S    Q  N+R  ++   V+  VC+I     CTY+S+  +    ++   
Sbjct: 1873 NQGCYWNSTSNSCSEYQIANQRKCSDFNEVSPFVCQIQTLFACTYDSTTSSCKDSTANSL 1932

Query: 213  KPCFGKYICV 242
            +    K  C+
Sbjct: 1933 ETGISKLACL 1942


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,495,505
Number of Sequences: 1657284
Number of extensions: 12892829
Number of successful extensions: 35312
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 33453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35293
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)