Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p22
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   2.1  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   2.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   3.7  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   4.9  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.5  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 303 CRKKVYARTQRPLRSSDWTNNKNSRDHLSNLCQMCQELGYDCGKLFE 443
           C+K ++ R +  L   D T+   SR      C +C+E GY  G  ++
Sbjct: 475 CQKYIFMRWKDMLILKDQTDTSESRITGFYFCCLCRENGYIQGYYYD 521


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 339 LRSSDWTNNKNSRDHLSNLCQMCQELG 419
           + S++W    N  DHL+ + Q C+E G
Sbjct: 194 MSSNNWIVVSNEFDHLNKVSQKCKEAG 220


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 249 FRKHKCIYRSTACSFPNYVVYSFVS 175
           F  H+CI RST C+ P    Y F S
Sbjct: 257 FNTHRCIERSTDCNCPICGEYMFNS 281


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 524 PGNVS*GKAMQIVIIKFKKKQSFCILDLK*LSTIVSQFL 408
           PGN   GK++   I K K+KQ+F   DLK +++ +  F+
Sbjct: 398 PGNHG-GKSINEEITKNKQKQNFNESDLKNMASRIETFI 435


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 297 YRFDIFGAMICDCSKHFRKHKCIYRSTACSFPNYVVYS 184
           Y F +   + C  S +   + C++  +  SFP Y  YS
Sbjct: 113 YCFLLSTPVECSASTNSHSYDCLWNFSCNSFPEYSSYS 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,574
Number of Sequences: 5004
Number of extensions: 60539
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)