Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p22
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738     29   3.9  
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150...    29   5.1  
05_04_0423 - 21126038-21126556                                         28   8.9  
01_01_0235 - 1964981-1964997,1965545-1966325                           28   8.9  

>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
          Length = 707

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -1

Query: 360 LSSQKNVRVFECERTPSSGIVYRFDIFGAMICDCSKHFRKHKCIYRSTAC 211
           + +QKN+  + C+   S  + Y      A +C+CSK +  +  +  S  C
Sbjct: 245 VEAQKNLTSYACKSDHSVCLNYSSGAKSAYMCNCSKGYHGNPYLQGSNGC 294


>03_05_0990 -
           29503950-29504462,29504567-29504686,29514956-29515012,
           29515635-29515689,29515765-29515845,29515928-29515983,
           29516112-29516256,29516347-29516415,29517355-29517467,
           29517619-29517708,29518112-29518176,29519256-29519667
          Length = 591

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 444 SQITFHNRIPILDTSDTNYSDDLENSYYLS 355
           S I   N+I I+D +D + +DD+E+  +L+
Sbjct: 414 SMIEVWNKIDIVDNNDNDVTDDIEDEIFLT 443


>05_04_0423 - 21126038-21126556
          Length = 172

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 390 NLCQMCQELGYDCGKLF 440
           NLC MC     DCG LF
Sbjct: 5   NLCPMCNRFDEDCGHLF 21


>01_01_0235 - 1964981-1964997,1965545-1966325
          Length = 265

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -1

Query: 405 TSDTNYSDDLENSYYLSSQKNVRVFECERTPSSGIVYRF--DIFGAMICDCSK-HFRKHK 235
           T+ TNYS   +  + L  QKN    +C+    SG   R+  D   A  C CS    R+  
Sbjct: 200 TAGTNYSPQFKKGFVLEWQKN-GFGDCDACNGSGGQCRYINDSAAAFACLCSDGKLRRST 258

Query: 234 C 232
           C
Sbjct: 259 C 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,958
Number of Sequences: 37544
Number of extensions: 322706
Number of successful extensions: 856
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)