Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p22
         (738 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    28   0.35 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   1.8  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   1.8  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   7.4  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   9.8  
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    23   9.8  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 276 PQKYQICTRCRKKVYARTQRPLRSSDWTNNKNSRDHLSNLCQMCQELG 419
           P+K   C RCRK  + +   P+ S++   +   RD+ S   + C   G
Sbjct: 198 PEKKITCHRCRKPGHMKRDCPMESNNTPTSTTMRDY-SRKNENCSSSG 244


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 75  ECDSRERCQHCNRRAVNNLIVVNQVCEI-CTYNSSKQTSTPHSSGRNK 215
           EC S   CQ C R+  + L  + ++ E+    ++S+ T+T  ++   K
Sbjct: 389 ECRSTYVCQQCKRKHHSKLCKIGRLSEVEVVPSTSRLTATAQANCSKK 436


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 101  LTSFPRITLTGPKATHIQSNEC 36
            L +  R+ LTG K  HI SN C
Sbjct: 1411 LNNQKRVQLTGAKVHHIMSNWC 1432


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 324 RTQRPLRSSDWTNNKNSRDHLSNLCQMCQELGY 422
           R  R L    W ++  S D   N+C  C  +G+
Sbjct: 661 RCYRCLELGHWAHDCRSPDDRQNMCIRCGVVGH 693


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +3

Query: 75  ECDSRERCQHCNRRAVNNLIVVNQVCEICTYNSSKQTSTPHSSGRNKPCFGKYICVCGNA 254
           ECD     Q C   A+ +L+    V + C             S  ++ C G+  CVCG  
Sbjct: 524 ECDGTYHGQRCECSAMESLLEPGMV-DAC-----------RMSNASEECSGRGQCVCGVC 571

Query: 255 WSSRKSWPQK 284
              R+  P +
Sbjct: 572 VCERRPNPDE 581


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 363 NKNSRDHLSNLCQMCQELGYDCGKLFE 443
           N+++RDHL  L +   + G   GK+ E
Sbjct: 111 NRSTRDHLRLLLKQGADAGAVLGKIHE 137


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,177
Number of Sequences: 2352
Number of extensions: 14684
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)