Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p22
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021176-2|CAA15974.2|  267|Caenorhabditis elegans Hypothetical ...    40   0.002
Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical p...    30   1.5  
U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical p...    29   4.5  
U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family ...    29   4.5  
AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    29   4.5  
U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U39470-1|AAC71119.2|  189|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical...    28   7.9  
AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical...    28   7.9  
AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC024797-2|AAF60705.3|  339|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AL021176-2|CAA15974.2|  267|Caenorhabditis elegans Hypothetical
           protein Y43E12A.2 protein.
          Length = 267

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 165 YNSSKQTSTPHSSGRNKPCFGKYIC-VCGNAWSSRKSWPQKYQICTRCRKKVYARTQRPL 341
           +N+     TP+  GR K C+G++ C +C   W+S+ S   + Q C +C   V+   Q P+
Sbjct: 173 FNTPYDELTPYQ-GRKK-CYGEFTCQLCKRKWNSQNSVANEPQSCIKCHVPVFPHKQLPV 230

Query: 342 RSS 350
             +
Sbjct: 231 EKA 233


>Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical
           protein B0024.13b protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 488 VIIKFKKKQSFCILDLK*LSTIVSQFLTHLTQITQMISRILIICPVRR 345
           +++ F K+Q +CIL +   + + +    H T  T +++ +LI   V R
Sbjct: 121 LLLNFVKQQKYCILQMLYFNNVSNILCNHFTPSTSILALLLISLHVAR 168


>U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical
           protein C16C8.2 protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 141 NQVCEICTYNSSKQTSTPHSSGRNKPCFGKYICV 242
           NQ C  CT N  + TS   S  R+ P FG+++C+
Sbjct: 293 NQECAACTSNKGRCTSVFLS--RSDPTFGRFMCL 324


>U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical
           protein T20D4.8 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 191 CTRLFR*IVCTNFTNLINDNQIINSPSIAMLTSFPRITL 75
           CT   R I   NFT+L  D +I+ +P+I+   +   ITL
Sbjct: 35  CTNDTRIITKLNFTSLFEDREILVNPNISFPNNGTYITL 73


>U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family
           protein 1 protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 273 MICDCSKHFRKHKCIYRSTACSFPNYVVYSF 181
           ++ DC++ F K K ++RS A   PN V+ +F
Sbjct: 129 LLADCNEAFLKIKLVFRSGALDQPNPVLPTF 159


>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 191 CTRLFR*IVCTNFTNLINDNQIINSPSIAMLTSFPRITL 75
           CT   R I   NFT+L  D +I+ +P+I+   +   ITL
Sbjct: 48  CTNDTRIITKLNFTSLFEDREILVNPNISFPNNGTYITL 86


>U58756-7|AAY44004.1|  220|Caenorhabditis elegans Hypothetical
           protein F58F9.10 protein.
          Length = 220

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 213 KPCFGKYICVCGNAWSSRKSWPQKYQICTRCRKKVYART 329
           K C    +C  G  WS   +  +  Q C  C + +Y RT
Sbjct: 26  KQCAADVLCPPGGLWSEWTTTDKCKQSCGSCSEVIYIRT 64


>U39470-1|AAC71119.2|  189|Caenorhabditis elegans Hypothetical
           protein T08H4.2 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 318 YARTQRPLRSSDWTNNKNSRDHLSN 392
           +AR++RP   +DWTN    R+ L N
Sbjct: 7   HARSRRPSLHNDWTNEHAQRNALDN 31


>AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 239 CLRKCLEQSQIMAPKISNLYTMPEEGVRSHSKTLTF 346
           C  +CL  ++ MA  + N +T+P    ++H   L++
Sbjct: 340 CEEECLINAREMAVAVCNRFTLPPNSTKTHDYALSW 375


>AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10b protein.
          Length = 930

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 239 CLRKCLEQSQIMAPKISNLYTMPEEGVRSHSKTLTF 346
           C  +CL  ++ MA  + N +T+P    ++H   L++
Sbjct: 348 CEEECLINAREMAVAVCNRFTLPPNSTKTHDYALSW 383


>AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10a protein.
          Length = 959

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 239 CLRKCLEQSQIMAPKISNLYTMPEEGVRSHSKTLTF 346
           C  +CL  ++ MA  + N +T+P    ++H   L++
Sbjct: 377 CEEECLINAREMAVAVCNRFTLPPNSTKTHDYALSW 412


>AC024797-2|AAF60705.3|  339|Caenorhabditis elegans Hypothetical
           protein Y48G8AR.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 195 HSSGRNKPCFGKYIC-VCGNAWSSRKSW-PQKYQICTRCRKKVYARTQRPLRSSDWTNNK 368
           +S  + K C   +IC  C ++ SS  +  PQKY +CT C    Y+  +     ++W    
Sbjct: 109 NSGTKCKKC-SSHICDKCAHSVSSGSAQNPQKYSLCTVC----YSERELSAAKNEWVQGS 163

Query: 369 NSRDHLS 389
           +  +  S
Sbjct: 164 DEAEKTS 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,189,849
Number of Sequences: 27780
Number of extensions: 336018
Number of successful extensions: 1020
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)