Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p21
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    27   2.7  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    27   3.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.4  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   8.4  

>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 571 EKTFKSYDDLKAALFKEFPDVINTKEIHEMMSERKKRKDESCYDYMLEME 720
           EK    Y ++   +++   +  N KE  +   E+    DES YD+++++E
Sbjct: 91  EKVKTKYPNVPVHVYR-CAEAANEKEFAQKFGEKLWETDESRYDFLVKVE 139


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +1

Query: 466 QEVEDNTEIFDLTPIQQLLIARRTLTSTAAAWLRTEKTFKSYDDLKAALFKEFPDVINTK 645
           +EVE   +   L+P Q L +   +  +T  A ++ +   K Y DL + L   +PD    K
Sbjct: 297 EEVEKAYKDLTLSP-QDLKLGLESSVNTLLAGVQEQ--LKQYPDLDSILKAAYPD---PK 350

Query: 646 EIHEMMSERKKRK 684
           ++ + M ++K+ K
Sbjct: 351 DLKKAMKQKKQDK 363


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
 Frame = +1

Query: 433 NDASYTATNWAQEVEDNTEIFDLTPIQQLLIARRTLTSTAA--AWLRT-EKT--FKS--- 588
           N + +TA  W++++        L+   ++L+ RR L  +    ++ +T EKT  FKS   
Sbjct: 566 NGSIFTAQEWSEKLH-------LSSTNEVLLFRRLLVESLKGFSYYQTDEKTGVFKSSKN 618

Query: 589 --YDDLKAALFKEFPDVINTKEIHEMMSERKKRKDESCYDYMLEME 720
             Y  L ++L      ++  KE+ EM++      D S +  +LE E
Sbjct: 619 LAYSQLDSSLTTNPSKLLEEKELLEMLATLFLHLDPSVFVEILESE 664


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 385 NQSLMYVEEAIPKFSGNDASYTATNWAQEVEDNTEIFDLTPIQQLLIARRT 537
           +Q   Y+ E I +FSG  +++   N    +E N+      P+ + LIA  T
Sbjct: 378 DQPTSYMLECIREFSGLPSNFYNPNTRTVIEKNSISSAYGPLVESLIAHST 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,074
Number of Sequences: 5004
Number of extensions: 57710
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)