Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p21
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563     36   0.044
08_02_0168 - 13640894-13641973                                         31   0.71 
08_01_0688 - 6072815-6073918                                           31   0.71 
06_01_1059 + 8512335-8513444                                           31   0.71 
05_07_0090 - 27625611-27625787,27626181-27626204,27626727-276267...    30   1.6  
08_01_0310 + 2714773-2715309,2716426-2716650                           30   2.2  
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301...    28   6.6  

>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
          Length = 571

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = +1

Query: 418 PKFSGNDASYTATNWAQEVEDNTEIFDLTPIQQLLIARRTLTSTAAAWLRTEKTFKSYDD 597
           PKFS       A +W ++V+    +   TP+++ L A   L   AA W   E    ++ +
Sbjct: 317 PKFSQTVEPVEADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADW--WENYCNAHPE 374

Query: 598 LKAALFKEFPDVINTKEIHEMMSERKKRK 684
                + EF        + E   + KK +
Sbjct: 375 PTNIAWDEFATAFRAAHVPESTIDMKKEE 403


>08_02_0168 - 13640894-13641973
          Length = 359

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 379 VSNQSLM-YVEEAIPKFSGNDASYTATNWAQEVEDNTEIFDLTPIQQLLIARRTLTSTAA 555
           VS  SL+ ++   +  F G+     A +W   VED  E+FD+    +     + L   A 
Sbjct: 46  VSGVSLIQWIGMKLDSFDGSGTPVEAADWLSYVEDKMEVFDVLTPDRFHYGTQLLKGEAQ 105

Query: 556 AW 561
            W
Sbjct: 106 IW 107


>08_01_0688 - 6072815-6073918
          Length = 367

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/77 (20%), Positives = 31/77 (40%)
 Frame = +1

Query: 331 ENMPKDRQRYDEDAPLVSNQSLMYVEEAIPKFSGNDASYTATNWAQEVEDNTEIFDLTPI 510
           + M     + + +AP   N+   ++    P FS       A +W   +E   E+   T  
Sbjct: 36  QQMQNQLNQGNNNAPPPQNKLTDFLRVRPPTFSSTTNPVEAGDWLHTIEKKLELLQCTDQ 95

Query: 511 QQLLIARRTLTSTAAAW 561
           ++++ A   L   A+ W
Sbjct: 96  EKVVFASHQLQGPASEW 112


>06_01_1059 + 8512335-8513444
          Length = 369

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/77 (22%), Positives = 31/77 (40%)
 Frame = +1

Query: 331 ENMPKDRQRYDEDAPLVSNQSLMYVEEAIPKFSGNDASYTATNWAQEVEDNTEIFDLTPI 510
           + M     + + +AP   N+   ++    P FS       A +W   VE   E+   T  
Sbjct: 36  QQMQNQLNQGNNNAPPPQNKLTDFLRVRPPTFSSTTNLVEAGDWLHAVEKKLELLQCTDQ 95

Query: 511 QQLLIARRTLTSTAAAW 561
           ++++ A   L   A+ W
Sbjct: 96  EKVVFASHQLQGPASEW 112


>05_07_0090 -
           27625611-27625787,27626181-27626204,27626727-27626755,
           27626967-27627028,27627735-27627876,27628681-27628910,
           27629570-27629943
          Length = 345

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 574 KTFKSYDDLKAALFKEFPDVINTKEIHEMMSERKKRKDESCYDYMLEME 720
           KT+ SY+DL  AL K F   I  +      S+R +  D S  D + + E
Sbjct: 180 KTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQE 228


>08_01_0310 + 2714773-2715309,2716426-2716650
          Length = 253

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/77 (19%), Positives = 30/77 (38%)
 Frame = +1

Query: 331 ENMPKDRQRYDEDAPLVSNQSLMYVEEAIPKFSGNDASYTATNWAQEVEDNTEIFDLTPI 510
           + M     + + +AP   N+   ++    P FS       A +W   +E   E+   T  
Sbjct: 36  QQMQNQLNQGNNNAPPPQNKLTDFLRVRPPTFSSTTNPVEAGDWLHAIEKKLELLQCTDQ 95

Query: 511 QQLLIARRTLTSTAAAW 561
           ++++ A   L    + W
Sbjct: 96  EKVVFASHQLQGPTSEW 112


>09_04_0694 -
           19529084-19529201,19529464-19529544,19529637-19530136,
           19530444-19530540,19530633-19530775,19531187-19531528,
           19531810-19532031,19532292-19532330,19532386-19532601,
           19533101-19533196,19533416-19533481,19533777-19533821,
           19533903-19533965,19534274-19534344,19534599-19534699,
           19534896-19534972,19535856-19535900
          Length = 773

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 133 APKMWDGVSSRNKKNIY 83
           A +MW+ VSS NKK +Y
Sbjct: 559 AQQMWENVSSNNKKGVY 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,844,071
Number of Sequences: 37544
Number of extensions: 374018
Number of successful extensions: 891
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)