Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p21
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-3|CAB04447.1|  178|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical ...    29   4.5  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    28   7.9  
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    28   7.9  
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    28   7.9  
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    28   7.9  

>Z81545-3|CAB04447.1|  178|Caenorhabditis elegans Hypothetical
           protein F49H6.3 protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 363 VVSLSIFRHVFVVILLFEADESVGRNGYRRSRRVVVIKFSVL 238
           V+ +S+F  V V+I L     ++ RNGY  ++R   I  +VL
Sbjct: 56  VMEVSLFCTVLVLIQLIVTSNNIRRNGYSPTQRGKFISIAVL 97


>AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical
           protein C17F3.3 protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 571 EKTFKSYDDLKAALFKEFPDVINTKEIHEMMSERKKRKDESCYD 702
           +K  +  DD K+   +E  D I+ K+  E  SERK +KDE   D
Sbjct: 84  KKKTEEKDDKKSKKTEE-KDKISVKKTQETKSERKDKKDEKKED 126


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1613

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
 Frame = +1

Query: 403 VEEAIPKFSGNDASYT-ATNWAQEVED---NTEIFDLTPIQQLLIARRT-LTSTAAAWLR 567
           ++  I K +G   S   ++ W Q VED   N +  +  P ++  + ++  L  T    ++
Sbjct: 285 IKSHIKKVNGEKESIIYSSRWEQLVEDFFKNGDKAEFAPFEKFPLDKKMHLIKTITEQIQ 344

Query: 568 -TEKTFKSYDDLKAALFKEFPDVINT--KEIHEMMSERKKRKDESCYDYMLEMEGT 726
             E          A L + F     +  KEIHE +  +  +K +S  ++ L + GT
Sbjct: 345 EVENNMPETSHFLARLVRIFRTTSTSQLKEIHETLYVKADKKIQSLMEHALAIAGT 400


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           b protein.
          Length = 1558

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
 Frame = +1

Query: 403 VEEAIPKFSGNDASYT-ATNWAQEVED---NTEIFDLTPIQQLLIARRT-LTSTAAAWLR 567
           ++  I K +G   S   ++ W Q VED   N +  +  P ++  + ++  L  T    ++
Sbjct: 285 IKSHIKKVNGEKESIIYSSRWEQLVEDFFKNGDKAEFAPFEKFPLDKKMHLIKTITEQIQ 344

Query: 568 -TEKTFKSYDDLKAALFKEFPDVINT--KEIHEMMSERKKRKDESCYDYMLEMEGT 726
             E          A L + F     +  KEIHE +  +  +K +S  ++ L + GT
Sbjct: 345 EVENNMPETSHFLARLVRIFRTTSTSQLKEIHETLYVKADKKIQSLMEHALAIAGT 400


>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           a protein.
          Length = 1613

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
 Frame = +1

Query: 403 VEEAIPKFSGNDASYT-ATNWAQEVED---NTEIFDLTPIQQLLIARRT-LTSTAAAWLR 567
           ++  I K +G   S   ++ W Q VED   N +  +  P ++  + ++  L  T    ++
Sbjct: 285 IKSHIKKVNGEKESIIYSSRWEQLVEDFFKNGDKAEFAPFEKFPLDKKMHLIKTITEQIQ 344

Query: 568 -TEKTFKSYDDLKAALFKEFPDVINT--KEIHEMMSERKKRKDESCYDYMLEMEGT 726
             E          A L + F     +  KEIHE +  +  +K +S  ++ L + GT
Sbjct: 345 EVENNMPETSHFLARLVRIFRTTSTSQLKEIHETLYVKADKKIQSLMEHALAIAGT 400


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
 Frame = +1

Query: 403 VEEAIPKFSGNDASYT-ATNWAQEVED---NTEIFDLTPIQQLLIARRT-LTSTAAAWLR 567
           ++  I K +G   S   ++ W Q VED   N +  +  P ++  + ++  L  T    ++
Sbjct: 285 IKSHIEKVNGEKESIIYSSRWEQLVEDFFKNGDKAEFAPFEKFPLDKKMHLIKTITEQIQ 344

Query: 568 -TEKTFKSYDDLKAALFKEFPDVINT--KEIHEMMSERKKRKDESCYDYMLEMEGT 726
             E          A L + F     +  KEIHE +  +  +K +S  ++ L + GT
Sbjct: 345 EVENNIPETSHFLARLVRIFRTTSTSQLKEIHETLYVKADKKIQSLMEHALAIAGT 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,323
Number of Sequences: 27780
Number of extensions: 325733
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)