Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p21
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.14 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.8  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 556 AWLRTEKTFKSYDDLKAALFKEFPDVINTKEIHE--MMSERKKRKDES 693
           AWL  ++  + Y+ LK  +  E+   I     HE  ++ ER K K +S
Sbjct: 42  AWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKS 89


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 94  FYFCWTPH--PTFWGLVRDGAEIYVNQQILK 180
           F+ CWTP+   + W  +   +   ++Q+I K
Sbjct: 269 FFICWTPYYVMSLWYWIDRNSAYKIDQRIQK 299


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 245 ENLITTTRRLRRYPFRPTDSSASNNKITTK 334
           +++ T  RR  RYP RP     S+ + T +
Sbjct: 111 QDIETIIRRNSRYPLRPPQEVISHYRRTRR 140


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
 Frame = +1

Query: 367 DAPLVSNQSLMYVEEAIPKFSGNDASYTATNWAQE---VEDNTEIFDLTPIQQLLIARRT 537
           DA ++   S         K   ND  Y+    A E   V D      L+P+   L     
Sbjct: 212 DALIIYQNSDDSFHRLTSKTFDNDLRYSELAVAGESFTVHDGIFGMALSPVTNNLYYS-P 270

Query: 538 LTSTAAAWLRTEKTFKSYDDLKAALFKEFPDVINTKEIHEMMSE 669
           LTS +  ++  E   KS  +     ++   D+ NT+   ++MS+
Sbjct: 271 LTSHSLYYVNMEPFMKSQYEENNIEYEGIQDIFNTQSSAKVMSK 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,875
Number of Sequences: 438
Number of extensions: 4060
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)