Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2p14
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 264 5e-71
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 264 5e-71
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 262 2e-70
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 255 2e-68
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 53 2e-07
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 50 1e-06
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 44 8e-05
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 33 0.15
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 33 0.15
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.78
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.4
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.8
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.4
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.4
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 4.1
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 4.1
At1g48980.1 68414.m05491 hypothetical protein 24 5.1
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 27 9.6
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 264 bits (646), Expect = 5e-71
Identities = 123/215 (57%), Positives = 158/215 (73%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 416 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 595
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181
Query: 596 VHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 700
V +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 264 bits (646), Expect = 5e-71
Identities = 123/215 (57%), Positives = 158/215 (73%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 416 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 595
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181
Query: 596 VHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 700
V +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 262 bits (641), Expect = 2e-70
Identities = 121/215 (56%), Positives = 157/215 (73%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121
Query: 416 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 595
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQN 181
Query: 596 VHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 700
V +S+NFLVSLLKK+WQNVR L++KSTMGPPQR++
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 255 bits (625), Expect = 2e-68
Identities = 118/216 (54%), Positives = 157/216 (72%), Gaps = 1/216 (0%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 232
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 233 KMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 412
KM++C+LGD QH +EA+ + + M SES+IKQIP
Sbjct: 62 KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121
Query: 413 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 592
RLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ Q
Sbjct: 122 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 181
Query: 593 NVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 700
NV +S+NFLVSLLKK+WQNVR L++KSTMGPP R++
Sbjct: 182 NVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = +2
Query: 395 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 571
+I +P+L+G ++ K P + + + ++I++ G F M+ C ++ V + M
Sbjct: 137 VIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSM 196
Query: 572 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 670
D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 197 ESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +2
Query: 395 LIKQIPRLLGPGLNKAGKFPGLLS-HQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 571
+I +PR++G + K P L + +I++ G+ F ++ C + VG + M
Sbjct: 157 IIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSM 216
Query: 572 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 670
E+ +NV ++N LV L W VRSLH+K
Sbjct: 217 DICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +2
Query: 395 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 571
L+ +P+LLG K K P ++ + S ++I++ + F + C V V + M
Sbjct: 148 LMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFFVGTGTCSVVKVAKLSM 207
Query: 572 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 670
+E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 208 GRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 35 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 205
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 206 VKLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 304
+K + PK +VCV D +CDE L VP +
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTL 368
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 33.5 bits (73), Expect = 0.15
Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 10/222 (4%)
Frame = +2
Query: 47 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIP 226
K K + +++ + A+ + + K F ET+E + L + + GT+ L +
Sbjct: 177 KPELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSV 236
Query: 227 RPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQ 406
+ ++V + ++AK + + +
Sbjct: 237 KKDVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPR--VYK 294
Query: 407 IPRLLGPGLNKAGKFPGLL--SHQESMTQKIDEVK-GTIKFQMKKVLCLSVAVGHVDMTP 577
I R+L N G P S + +T+ + + K G KF+M K L V +G + +
Sbjct: 295 ISRIL----NNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSE 350
Query: 578 DELAQNVHLSINFLV-----SLLK--KHWQNVRSLHMKSTMG 682
+ L +NV +N L+ L K K+ V + H+ STMG
Sbjct: 351 EALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMG 392
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 134 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 247
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 53 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 193
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 584 LAQNVHLSINFLVSLLKKH 640
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 584 LAQNVHLSINFLVSLLKKH 640
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 584 LAQNVHLSINFLVSLLKKH 640
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 234 FGRGMYFSFTVPEKRLSFC 178
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -3
Query: 212 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 36
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At1g48980.1 68414.m05491 hypothetical protein
Length = 264
Score = 24.2 bits (50), Expect(2) = 5.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 598 HILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLL 485
H LS+ R+H+ N RK + ++NG L +N+L
Sbjct: 66 HKLSRKQRTHIRAINVKRKRDFVCLEKVNGEL--VNIL 101
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 637 FLEQ*HKEVDGKMHILSKLIRS 572
F+ Q E+ K+++LSK IRS
Sbjct: 6 FIRQSELEIASKVNLLSKRIRS 27
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/79 (17%), Positives = 39/79 (49%)
Frame = +2
Query: 53 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 232
S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P
Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116
Query: 233 KMQVCVLGDQQHCDEAKTL 289
++ ++G++ D+ +L
Sbjct: 117 RITGIMVGNELFTDDDSSL 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,193
Number of Sequences: 28952
Number of extensions: 349587
Number of successful extensions: 878
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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