Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p13
         (325 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   1.1  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   1.1  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   4.3  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    20   7.5  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -2

Query: 303 IXIYLAHIDSXRSXSLXGRRWFPFFKTITEAPP 205
           + ++L++++S  + +L  ++W   FKT+T   P
Sbjct: 143 VTLWLSNVNSL-TLTLKRKKWNLLFKTLTHDEP 174


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -2

Query: 303 IXIYLAHIDSXRSXSLXGRRWFPFFKTITEAPP 205
           + ++L++++S  + +L  ++W   FKT+T   P
Sbjct: 69  VTLWLSNVNSL-TLTLKRKKWNLLFKTLTHDEP 100


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 106 GYPAAKXRSYHWSV 147
           G  A+K  S+HW +
Sbjct: 233 GMAASKLNSFHWHI 246


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 19.8 bits (39), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 208 RRFRNGFKEGKPT 246
           R+F   F+ GKP+
Sbjct: 113 RKFETSFESGKPS 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,008
Number of Sequences: 336
Number of extensions: 704
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6155018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)