Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p13
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   102   2e-23
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   101   3e-23
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   1.2  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   2.1  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  102 bits (244), Expect = 2e-23
 Identities = 44/82 (53%), Positives = 53/82 (64%)
 Frame = +1

Query: 1   KGTSGFGKRRNKTHTLCRRCGRSSYHIXQSKCAXXGYPAAKXRSYHWSVKAXXXXXXXXX 180
           KGT  FG R NK+HT+CRRCG+ S+HI +S CA  GYPAAK RSY+W  KA         
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62

Query: 181 XXXHLXIVRRRFRNGFKEGKPT 246
              +L  V R F+NGF+ GKPT
Sbjct: 63  RMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  101 bits (242), Expect = 3e-23
 Identities = 45/89 (50%), Positives = 54/89 (60%)
 Frame = +1

Query: 1   KGTSGFGKRRNKTHTLCRRCGRSSYHIXQSKCAXXGYPAAKXRSYHWSVKAXXXXXXXXX 180
           KGT  FG R NK+HT+CRRCG+ S+HI +S CA  GYPAAK RSY+W  KA         
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62

Query: 181 XXXHLXIVRRRFRNGFKEGKPTPPXKAVA 267
              +L  V R F+NGF+ GKP     A A
Sbjct: 63  RMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   KGTSGFGKRRNKTHTLCRRCGRSS 72
           KGTSG    R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 1   KGTSGFGKRRNKTHTLCRRCGRSSYH 78
           KGT+G GK  +K+    RR   SS H
Sbjct: 602 KGTTGLGKSESKSSRKERRSSTSSGH 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 928,380
Number of Sequences: 5004
Number of extensions: 11646
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)