Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p13
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...   102   6e-23
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...   101   1e-22
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...   101   2e-22
12_01_1051 - 10806183-10806540,10807973-10808043                       26   7.8  

>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score =  102 bits (245), Expect = 6e-23
 Identities = 45/91 (49%), Positives = 58/91 (63%)
 Frame = +1

Query: 1   KGTSGFGKRRNKTHTLCRRCGRSSYHIXQSKCAXXGYPAAKXRSYHWSVKAXXXXXXXXX 180
           KGT  FGKRRNKTHTLC RCGR S+H+ +S C+  GYPAA+ R Y+WSVKA         
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 62

Query: 181 XXXHLXIVRRRFRNGFKEGKPTPPXKAVASS 273
              ++  V RRF++ F+EG    P K  A++
Sbjct: 63  RMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score =  101 bits (243), Expect = 1e-22
 Identities = 45/89 (50%), Positives = 56/89 (62%)
 Frame = +1

Query: 1   KGTSGFGKRRNKTHTLCRRCGRSSYHIXQSKCAXXGYPAAKXRSYHWSVKAXXXXXXXXX 180
           KGT  FGKRRNKTHTLC RCGR S+H+ +S C+  GYPAA+ R Y+WSVKA         
Sbjct: 24  KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 83

Query: 181 XXXHLXIVRRRFRNGFKEGKPTPPXKAVA 267
              ++  V RRF++ F+EG    P K  A
Sbjct: 84  RMRYMRHVPRRFKSNFREGTEATPRKRAA 112


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score =  101 bits (241), Expect = 2e-22
 Identities = 45/91 (49%), Positives = 58/91 (63%)
 Frame = +1

Query: 1   KGTSGFGKRRNKTHTLCRRCGRSSYHIXQSKCAXXGYPAAKXRSYHWSVKAXXXXXXXXX 180
           KGT  FGKRRNKTHTLC RCGR S+H+ +S C+  GYPAA+ R Y+WSVKA         
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTG 62

Query: 181 XXXHLXIVRRRFRNGFKEGKPTPPXKAVASS 273
              +L  V +RF++ F+EG    P K  A++
Sbjct: 63  RMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93


>12_01_1051 - 10806183-10806540,10807973-10808043
          Length = 142

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 4   GTSGFGKRRNKTHTLCRRCGRSS 72
           G  G+G+ RN+T  L RR GRSS
Sbjct: 69  GGGGWGRGRNRTRRLWRR-GRSS 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,479,084
Number of Sequences: 37544
Number of extensions: 84659
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)