Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p12
         (766 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D575D2 Cluster: PREDICTED: similar to CG13868-PA...   132   9e-30
UniRef50_UPI00015B5AD4 Cluster: PREDICTED: similar to GA12584-PA...   126   8e-28
UniRef50_UPI00003C0017 Cluster: PREDICTED: similar to CG13868-PA...   109   6e-23
UniRef50_A1ZBT2 Cluster: CG13868-PA; n=4; Diptera|Rep: CG13868-P...    97   4e-19
UniRef50_Q89DY1 Cluster: Two-component response regulator; n=1; ...    34   4.4  
UniRef50_Q64WG0 Cluster: Putative uncharacterized protein; n=6; ...    34   4.4  
UniRef50_A3ESR9 Cluster: Acyl transferase; n=1; Leptospirillum s...    34   4.4  
UniRef50_Q4YR56 Cluster: Putative uncharacterized protein; n=5; ...    33   5.9  
UniRef50_Q2RMU5 Cluster: Sensor protein; n=1; Rhodospirillum rub...    33   7.8  

>UniRef50_UPI0000D575D2 Cluster: PREDICTED: similar to CG13868-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG13868-PA - Tribolium castaneum
          Length = 438

 Score =  132 bits (319), Expect = 9e-30
 Identities = 67/175 (38%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
 Frame = +3

Query: 246 GSWPADHXXXXXXXXXXXXXXHL--TLRQYEELVAKAEVLLSRLVVSENYDSISNFLTHY 419
           GSWP DH              +   TL  +E L AK E+ + RL+   NY+++ NF+  Y
Sbjct: 77  GSWPIDHPLPLPRWSCKSQKCYQLETLTHFENLAAKIELHVQRLLEEHNYNTVGNFIDLY 136

Query: 420 DAYMASPIDTLKEFYQKYNPPIRAHKHTCVGLGMEVIKRLKLLEKDFPGITKAMMLVSCD 599
             +  S      +++Q Y PPI    HTCVGL +E+  RL  LE  FP I++ + LVSC+
Sbjct: 137 QNFKKSGCCNFFKYFQSYAPPITPAHHTCVGLALELWNRLHQLEVSFPEISQHLFLVSCE 196

Query: 600 ENIEDLDDYTTSFPGPQGFLIETEKDHVLVAIHVKVDGRPGVFLSDLGYHISRAV 764
           ENIE L +YT           + EK+HVL+ +  K++ R G+ L D GYH+SR V
Sbjct: 197 ENIEALSEYTALSERLDTAAYDLEKEHVLLCLRFKINERQGLLLCDPGYHVSRVV 251


>UniRef50_UPI00015B5AD4 Cluster: PREDICTED: similar to GA12584-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           GA12584-PA - Nasonia vitripennis
          Length = 396

 Score =  126 bits (303), Expect = 8e-28
 Identities = 60/150 (40%), Positives = 87/150 (58%)
 Frame = +3

Query: 315 TLRQYEELVAKAEVLLSRLVVSENYDSISNFLTHYDAYMASPIDTLKEFYQKYNPPIRAH 494
           T+ QYEEL +  E+   RL+    YD++ N L  Y  +  S    L+ FY+KY P I   
Sbjct: 60  TVEQYEELASSVELETQRLLRERRYDTVDNVLRFYRDFKKSGESNLEHFYRKYQPLIVNE 119

Query: 495 KHTCVGLGMEVIKRLKLLEKDFPGITKAMMLVSCDENIEDLDDYTTSFPGPQGFLIETEK 674
           +HTCVGLG E+++RL  L K FPG+   + LVSC+E I D+  Y    P         EK
Sbjct: 120 RHTCVGLGFELLRRLCGLNKRFPGLASGLYLVSCEETIGDIASYVGGPPAAD----SGEK 175

Query: 675 DHVLVAIHVKVDGRPGVFLSDLGYHISRAV 764
           +HVLV + ++++ R G+ L D GYH++R +
Sbjct: 176 EHVLVCLKIEINNRRGIMLLDPGYHVARVI 205


>UniRef50_UPI00003C0017 Cluster: PREDICTED: similar to CG13868-PA;
           n=2; Apis mellifera|Rep: PREDICTED: similar to
           CG13868-PA - Apis mellifera
          Length = 351

 Score =  109 bits (263), Expect = 6e-23
 Identities = 53/116 (45%), Positives = 69/116 (59%)
 Frame = +3

Query: 417 YDAYMASPIDTLKEFYQKYNPPIRAHKHTCVGLGMEVIKRLKLLEKDFPGITKAMMLVSC 596
           Y  Y+AS    L+ FY KY P I    HTCVGLG E++ RLK L K FPGI     LVSC
Sbjct: 46  YKDYIASGETVLERFYHKYQPLITREHHTCVGLGFELLYRLKCLNKRFPGIASGFYLVSC 105

Query: 597 DENIEDLDDYTTSFPGPQGFLIETEKDHVLVAIHVKVDGRPGVFLSDLGYHISRAV 764
           +E I+++ +Y    P         EK+HVLV + +K+ GR GV L D GYH++R +
Sbjct: 106 EETIDNVANYVGGPPAAD----SGEKEHVLVCLKIKIGGRQGVMLLDPGYHVARVI 157


>UniRef50_A1ZBT2 Cluster: CG13868-PA; n=4; Diptera|Rep: CG13868-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 523

 Score = 97.1 bits (231), Expect = 4e-19
 Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 2/149 (1%)
 Frame = +3

Query: 324 QYEELVAKAEVLLSRLVVSENYDSISNFLTHYDAYMASPIDTLKEFYQKYNPPIRAHKHT 503
           QYEEL    E  L R++   +Y++++ F+  Y ++  +    L+ F+Q Y+ PI    H 
Sbjct: 186 QYEELNGIVETTLQRMLEETHYNTVNLFVDFYRSFKRTRRSDLRSFFQFYDVPINRRHHM 245

Query: 504 CVGLGMEVIKRLKLLEKDFPGITKAMMLVSCDENIEDLDDYT--TSFPGPQGFLIETEKD 677
           CV L  E++ R+  +   FP +   + +VSC+E + D +DY       G        EK+
Sbjct: 246 CVSLAFEIMARMVQM---FPVLANYLYVVSCEEQVMDCNDYVQLDEECGLNSVDAGVEKE 302

Query: 678 HVLVAIHVKVDGRPGVFLSDLGYHISRAV 764
           HV+VA+ + +  R GV + D GYH+SRAV
Sbjct: 303 HVMVAMRIAIGDRRGVMILDPGYHVSRAV 331


>UniRef50_Q89DY1 Cluster: Two-component response regulator; n=1;
           Bradyrhizobium japonicum|Rep: Two-component response
           regulator - Bradyrhizobium japonicum
          Length = 211

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +3

Query: 516 GMEVIKRLKLLEKDFPGITKAMMLVSCDENIEDLDDYTTSFPGPQGFLIETE-KDHVLVA 692
           G+EV +RLK L+     +   +++++  E+ E L +   +  G +GFL +++ K H++ A
Sbjct: 62  GLEVSRRLKALD-----LRTEVLILTMHEDEELLSEAVLA--GVRGFLFKSDAKKHLISA 114

Query: 693 IHVKVDGRP 719
           I   +DGRP
Sbjct: 115 IEALLDGRP 123


>UniRef50_Q64WG0 Cluster: Putative uncharacterized protein; n=6;
           Bacteroides|Rep: Putative uncharacterized protein -
           Bacteroides fragilis
          Length = 1864

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +3

Query: 645 PQGFLIETEKDHVLVAIHVKVDGRPGVFLSDLGYHISR 758
           PQG  IET+K+H+   + V  DG+P V  S L Y I R
Sbjct: 867 PQGRYIETDKEHIFDIVTVNSDGKP-VNRSGLEYKIYR 903


>UniRef50_A3ESR9 Cluster: Acyl transferase; n=1; Leptospirillum sp.
           Group II UBA|Rep: Acyl transferase - Leptospirillum sp.
           Group II UBA
          Length = 247

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -2

Query: 762 RRERCDIQDPTGTRRVCRRL*RGSPLARGPSQSR 661
           RR R    DP   R +CRRL RGSP + G  Q R
Sbjct: 119 RRRRPRSGDPGAPRHLCRRLCRGSPGSHGARQGR 152


>UniRef50_Q4YR56 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium berghei
          Length = 384

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 372 VVSENYDSISNFLTHYDAYMASPIDTLKEFYQKYNP--PIRAHKHTCVGLGMEVIKRLKL 545
           ++ EN D I NFL++    M     +LK+FY  Y+   P    KHT   L  + I  LKL
Sbjct: 99  LIIENKDKIDNFLSNISKEMLIENQSLKDFYFLYSTIFPSNKFKHT---LTRDDINDLKL 155

Query: 546 LEKDF 560
             ++F
Sbjct: 156 ENENF 160


>UniRef50_Q2RMU5 Cluster: Sensor protein; n=1; Rhodospirillum rubrum
           ATCC 11170|Rep: Sensor protein - Rhodospirillum rubrum
           (strain ATCC 11170 / NCIB 8255)
          Length = 672

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = +3

Query: 453 KEFYQKYNPPIRAHKHTCVGLGMEVIKRLKLLEKDFPGITKAMMLVSCDENIEDLDDYTT 632
           ++F+Q  NP     K   +GLG+ ++KR+ LL     G+       SC         +T 
Sbjct: 444 EDFHQVENPA--REKGEGLGLGLAIVKRVALLLGARVGVRSLPGRGSC---------FTI 492

Query: 633 SFPGPQGFLIETEKDHVL 686
             PGPQG  IE  +D +L
Sbjct: 493 RLPGPQGRAIERPEDGLL 510


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,514,394
Number of Sequences: 1657284
Number of extensions: 13813322
Number of successful extensions: 39725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39710
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)