Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p12
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   2.2  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   2.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.9  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    27   3.9  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     26   5.1  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   6.8  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   9.0  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   9.0  

>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +3

Query: 369 LVVSENYDSISNFLTHYDAYMASPID-----TLKEFYQKYNPPIR 488
           ++VSEN  + SN L+ Y+A  AS  D      L+ +   Y PPIR
Sbjct: 188 ILVSENATAGSNSLSSYNACPASDADDFTTPALEAWRNVYMPPIR 232


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 389 IVFGNNETTQQYLGFGYQLLVLTESEVQSRTGCPPARRRQGVVGRPATGIILVPG 225
           ++ G N+  +       + L+ +++E+Q       A R +  + RPA+  IL PG
Sbjct: 209 LLIGENQDAENTADTSKRGLLTSQTEIQFFKAAHSALRLKASMTRPASNAILQPG 263


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 497 FVGADRRIIFLVEFFQGVDRGSHVSVVVRQEVANGIIVFGN 375
           F G   +      FFQG+  G+H++   R  V   + VFG+
Sbjct: 336 FQGGVSQFFLYSVFFQGLWFGNHLATTKRVNVGQVVTVFGS 376


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 389 IVFGNNETTQQYLGFGYQLLVLTESE 312
           IV   NET +   GFGY L  +T  E
Sbjct: 237 IVSDRNETRKNVFGFGYNLPTMTVDE 262


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 654 FLIETEKDHVLVAIHVKVDGRPGVFLSDLGYHISR 758
           FL+  E+D +L ++     G P  F +D G ++ R
Sbjct: 216 FLLRNEQDRILGSVSRNFMGLPREFFTDTGNYVLR 250


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 305 FAPHSPSIRGVGSQSRGTVES 367
           F  HS SI+G+ S  +GTV S
Sbjct: 266 FLSHSESIKGLSSSEQGTVYS 286


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 393 SISNFLTHYDAYMASPIDTLKEFY 464
           SISN +  +D YMA  +    EF+
Sbjct: 428 SISNIIRMWDTYMAEGVQGFSEFH 451


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 339 VAKAEV-LLSRLVVSENYDSISNFLTHY 419
           V K E+  L++ +V +    ISNFLTHY
Sbjct: 41  VPKIEMNFLNKPIVPDTTKVISNFLTHY 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,487
Number of Sequences: 5004
Number of extensions: 51139
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)