Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p12
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332     30   2.3  
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644...    29   4.1  
11_06_0307 - 22250221-22250482,22250664-22250758                       29   5.4  
03_05_0391 - 23740603-23740665,23740805-23740927,23741009-237411...    29   5.4  

>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
          Length = 524

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 519 CPDPRRCVCGRGSAD 475
           C DP RCVC RGS+D
Sbjct: 291 CADPVRCVCVRGSSD 305


>07_03_0056 -
           12863599-12863715,12864107-12864235,12864322-12864408,
           12864657-12864848,12864930-12865106,12865174-12865420,
           12865510-12865619,12865751-12865851,12865937-12866000,
           12866433-12866522,12866621-12866719,12866817-12866897,
           12867197-12867535
          Length = 610

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 470 FLVEFFQGVDRGSHVSVVVRQE-----VANGIIVFGNNETTQQYLGFGYQLLVLTESEVQ 306
           ++ E   G D+G  +  ++R +     + NG+ V+  N  T QY+   Y    +TE+   
Sbjct: 325 YVKELASGPDKGVELDGILRTKPLETGIVNGMDVYEWNPATDQYISVKYDATTVTEARAL 384

Query: 305 SR 300
           ++
Sbjct: 385 NK 386


>11_06_0307 - 22250221-22250482,22250664-22250758
          Length = 118

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 132 PTAPTVSTSGEARAIRRIVGRWGAEWLS*LGSRHQDNAGSW 254
           P +P+   SG+A     + GRWG    S +G  H  N G+W
Sbjct: 11  PRSPSRRPSGDAADEGGVAGRWG----SLVGFFHNHNHGAW 47


>03_05_0391 -
           23740603-23740665,23740805-23740927,23741009-23741148,
           23741209-23741264,23742005-23742262,23743290-23743627
          Length = 325

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 745 YPRSDRNTPGLPSTLTWIATSTWSFSVSIRNP*GPGN 635
           +P +D+  P   + L     +TW+ S   RNP GPG+
Sbjct: 22  FPHTDKKVP--MANLNSYHLATWADSAKTRNPTGPGS 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,448
Number of Sequences: 37544
Number of extensions: 398746
Number of successful extensions: 1144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)