Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2p11
         (101 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41477 Cluster: Late expression factor 4; n=13; Nucleop...    71   5e-12
UniRef50_Q65345 Cluster: Lef-4 protein; n=1; Autographa californ...    69   3e-11

>UniRef50_P41477 Cluster: Late expression factor 4; n=13;
           Nucleopolyhedrovirus|Rep: Late expression factor 4 -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 464

 Score = 70.9 bits (166), Expect = 5e-12
 Identities = 30/30 (100%), Positives = 30/30 (100%)
 Frame = -1

Query: 92  SKHKKFVYWPKDTNALVPLVWRESKEIKLP 3
           SKHKKFVYWPKDTNALVPLVWRESKEIKLP
Sbjct: 72  SKHKKFVYWPKDTNALVPLVWRESKEIKLP 101


>UniRef50_Q65345 Cluster: Lef-4 protein; n=1; Autographa californica
           nucleopolyhedrovirus|Rep: Lef-4 protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 64

 Score = 68.5 bits (160), Expect = 3e-11
 Identities = 29/30 (96%), Positives = 29/30 (96%)
 Frame = +3

Query: 3   RQFDFFALSPHQRHQRVGIFRPINKFFVFG 92
           RQFDFFA SPHQRHQRVGIFRPINKFFVFG
Sbjct: 29  RQFDFFAFSPHQRHQRVGIFRPINKFFVFG 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,553,205
Number of Sequences: 1657284
Number of extensions: 1105175
Number of successful extensions: 3592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3591
length of database: 575,637,011
effective HSP length: 14
effective length of database: 552,435,035
effective search space used: 10496265665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)