Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o24
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   3.4  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   5.9  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   5.9  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    25   7.8  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +1

Query: 214 AQINSEDESVLDFIIEDEYYLKKR--GVGAHIIKVASSPQLRLLYKSAYSAVSCGNYSVL 387
           A +  +D   L F+ E + +  +    V  + +  +S   + LL+ + +++++ G  +V 
Sbjct: 582 AVVPHDDGINLSFMCESKVFDLESVDSVTCNYVLSSSKNPMNLLF-TLHNSITDGKLNVH 640

Query: 388 CNLVQNGEYDLNAIMFNCAEIKLN 459
           CN +  G Y L  I+F   +  L+
Sbjct: 641 CNDIIPGRYHLKTIVFKLKDSVLS 664


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 15  NIRHVAYYVGCGFVCVGALYVFDHCLEPLGVSRFVKF 125
           NI  +A ++G   +  G   +F  CL  L V  F KF
Sbjct: 392 NIHWIAPFIGISMMGAGFFVIFQGCLNYL-VDTFTKF 427


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 384 NTIVAARHRRIGAFVQQSKLRRASHLDNMGANAPF 280
           +T +A +H+   +    S LRR+  +D M +NA F
Sbjct: 375 STWIANKHKTASSATVDSPLRRSLSVDAMQSNASF 409


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 271 YLKKRGVGAHIIKVASSPQLRLLYKSAYSAVSCGNYS 381
           Y    G+ A +++  S  +L L++   Y+A   GN S
Sbjct: 62  YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVS 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,466
Number of Sequences: 5004
Number of extensions: 44767
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)