Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o24
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    27   9.5  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    27   9.5  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    27   9.5  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      27   9.5  

>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 299 ILSRWLARRNLDCCTKAPILRCRAATIVFCAIWCKTANTIL 421
           IL+ WLA +    CT   I+      +V CA+WC +  T L
Sbjct: 84  ILTGWLAMKGAVYCTHPNIIYISG--MVVCALWCSSCMTAL 122


>AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical
           protein C29G2.4 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 197 GAMLLVSATFLIIAFTPIYLAIYPKFDETTYTKRLQAMI 81
           G  L+VS TFL+  + P Y+AI       + T RL  ++
Sbjct: 40  GIYLVVSGTFLLSLYLPCYIAILKSKSRKSPTYRLMLIL 78


>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
           protein C34F6.9 protein.
          Length = 1181

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 202 IIVNAQINSEDESVLDFIIEDEYYLKKRGVGAHIIKVASSPQLRLLYKSAYSAV 363
           II     NSE +S+  F   D ++LK +GV  H     +SP  ++  KS+ S V
Sbjct: 141 IITKDSFNSE-KSLASFSYADSFFLKMKGV--HNNNEVASPDEKVQEKSSVSPV 191


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  HCLEPLGVSRFVKFGIN 134
           +C EPLG+  F K GIN
Sbjct: 776 NCFEPLGMEDFAKLGIN 792


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  HCLEPLGVSRFVKFGIN 134
           +C EPLG+  F K GIN
Sbjct: 872 NCFEPLGMEDFAKLGIN 888


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  HCLEPLGVSRFVKFGIN 134
           +C EPLG+  F K GIN
Sbjct: 844 NCFEPLGMEDFAKLGIN 860


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 84  HCLEPLGVSRFVKFGIN 134
           +C EPLG+  F K GIN
Sbjct: 776 NCFEPLGMEDFAKLGIN 792


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,438
Number of Sequences: 27780
Number of extensions: 254118
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)