Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o20
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   227   2e-60
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   226   2e-60
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    30   0.30 
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    27   3.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.9  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   6.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  227 bits (554), Expect = 2e-60
 Identities = 108/183 (59%), Positives = 127/183 (69%)
 Frame = +2

Query: 95  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 275 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 454
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 455 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 634
                              ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRD 179

Query: 635 ILK 643
           ++K
Sbjct: 180 VVK 182



 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 20/33 (60%), Positives = 29/33 (87%)
 Frame = +3

Query: 639 LKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFQQ 737
           +KV  S++LRAGKGK+RNRR +QR+GPL++F +
Sbjct: 181 VKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNE 213


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  226 bits (553), Expect = 2e-60
 Identities = 107/183 (58%), Positives = 127/183 (69%)
 Frame = +2

Query: 95  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 275 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 454
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 455 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 634
                              ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRD 179

Query: 635 ILK 643
           ++K
Sbjct: 180 VIK 182



 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 20/33 (60%), Positives = 29/33 (87%)
 Frame = +3

Query: 639 LKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFQQ 737
           +KV  S++LRAGKGK+RNRR +QR+GPL++F +
Sbjct: 181 IKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNE 213


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 684 FYPYQHEDAETCTPLRISDHALRRLRKMTACLVLLISWTLSATTKGSSGIFSIMCPL 514
           FYP   E  + CT L +++      +  T C +L  S  L   +K  + +F ++  L
Sbjct: 216 FYPILMEHIKRCTSLDLTNSVFSLSKVNTDCAILTSSGKLKIFSKAQNIVFDVLLAL 272


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 563 DKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW 673
           D V+   K KQ   FL  + +W D+     +    CW
Sbjct: 81  DAVKSTIKCKQCQSFLTSISSWKDLPSANWMEMLDCW 117


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 156 APCTVSLFSEYTDTKGRATDRLISLL 79
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 113 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 36
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,098
Number of Sequences: 5004
Number of extensions: 55796
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)