Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o18
(752 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius... 62 1e-08
UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal ... 50 8e-05
UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus... 48 3e-04
UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -... 38 0.20
UniRef50_P04456 Cluster: 60S ribosomal protein L25; n=10; Fungi/... 34 4.3
UniRef50_Q12IA3 Cluster: Putative uncharacterized protein precur... 33 5.7
UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1; ... 33 7.6
UniRef50_P62750 Cluster: 60S ribosomal protein L23a; n=126; Euka... 33 7.6
>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
melpomene|Rep: Ribosomal protein L23a - Heliconius
melpomene
Length = 221
Score = 62.5 bits (145), Expect = 1e-08
Identities = 32/53 (60%), Positives = 34/53 (64%)
Frame = +2
Query: 593 SKLKIAXXXXXXXXXXXXXXXXPVTKALKAQRKVVKGEHGKRVRKIRNSVHFR 751
+KLKIA PV KALK Q+KVVKGEHGKRVRKIR SVHFR
Sbjct: 129 AKLKIAPKPKKTGIKGQKKVVKPVVKALKIQKKVVKGEHGKRVRKIRTSVHFR 181
>UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal
protein L23Ae; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to ribosomal protein L23Ae - Nasonia vitripennis
Length = 247
Score = 49.6 bits (113), Expect = 8e-05
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 659 PVTKALKAQRKVVKGEHGKRVRKIRNSVHF 748
PV KALKAQ+K++KG G RVRKIR SVHF
Sbjct: 108 PVQKALKAQKKILKGVQGSRVRKIRTSVHF 137
>UniRef50_Q4GXF0 Cluster: Ribosomal protein L23Ae; n=1; Dascillus
cervinus|Rep: Ribosomal protein L23Ae - Dascillus
cervinus
Length = 212
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +2
Query: 659 PVTKALKAQRKVVKGEHGKRVRKIRNSVHF 748
PV KAL Q+KV+KG G R RKIRNSVHF
Sbjct: 141 PVQKALNVQKKVIKGPFGTRARKIRNSVHF 170
>UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -
Mycoplasma hyorhinis
Length = 1187
Score = 38.3 bits (85), Expect = 0.20
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 160 TCVSQNTGTCPESSCACPETSCACPE 237
+C ++ G C E SCACP T+CAC E
Sbjct: 380 SCAQEHCG-CQEESCACPNTTCACTE 404
Score = 38.3 bits (85), Expect = 0.20
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 160 TCVSQNTGTCPESSCACPETSCACPE 237
+C ++ G C E SCACP T+CAC E
Sbjct: 836 SCAQEHCG-CQEESCACPNTTCACTE 860
Score = 34.3 bits (75), Expect = 3.3
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 160 TCVSQN-TGTCPESSCACPETSCACPET 240
TC Q T +C + C C E SCACP T
Sbjct: 371 TCGCQEATCSCAQEHCGCQEESCACPNT 398
Score = 34.3 bits (75), Expect = 3.3
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 160 TCVSQN-TGTCPESSCACPETSCACPET 240
TC Q T +C + C C E SCACP T
Sbjct: 827 TCGCQEATCSCAQEHCGCQEESCACPNT 854
>UniRef50_P04456 Cluster: 60S ribosomal protein L25; n=10;
Fungi/Metazoa group|Rep: 60S ribosomal protein L25 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 142
Score = 33.9 bits (74), Expect = 4.3
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 659 PVTKALKAQRKVVKGEHGKRVRKIRNSVHFR 751
P KA A++ VVKG +GK+ K+R S FR
Sbjct: 3 PSAKATAAKKAVVKGTNGKKALKVRTSATFR 33
>UniRef50_Q12IA3 Cluster: Putative uncharacterized protein
precursor; n=1; Shewanella denitrificans OS217|Rep:
Putative uncharacterized protein precursor - Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Length = 149
Score = 33.5 bits (73), Expect = 5.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 169 SQNTGTCPESSCACPETSC 225
SQN+G C E+SC CP +SC
Sbjct: 87 SQNSGDCCENSCRCPVSSC 105
>UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1;
Blastopirellula marina DSM 3645|Rep: Putative
uncharacterized protein - Blastopirellula marina DSM
3645
Length = 155
Score = 33.1 bits (72), Expect = 7.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 160 TCVSQNTGTCPESSCACPETSCACPE 237
TC + PE +C PE SCA PE
Sbjct: 94 TCCAPEPACAPEPTCCAPEPSCAAPE 119
>UniRef50_P62750 Cluster: 60S ribosomal protein L23a; n=126;
Eukaryota|Rep: 60S ribosomal protein L23a - Homo sapiens
(Human)
Length = 156
Score = 33.1 bits (72), Expect = 7.6
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 668 KALKAQRKVVKGEHGKRVRKIRNSVHFR 751
KALKA++ V+KG H + +KIR S FR
Sbjct: 20 KALKAKKAVLKGVHSHKKKKIRTSPTFR 47
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,161,376
Number of Sequences: 1657284
Number of extensions: 4119124
Number of successful extensions: 13081
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13052
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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