Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o15
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 32 0.52
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 32 0.52
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 32 0.52
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic mul... 30 1.6
AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell... 30 1.6
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 30 2.1
AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical... 29 3.7
Z81091-5|CAB03142.1| 768|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 28 6.4
U41272-3|ABM01866.1| 186|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF040657-1|AAB95054.1| 758|Caenorhabditis elegans Hypothetical ... 28 8.5
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 31.9 bits (69), Expect = 0.52
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = -1
Query: 586 CSYTLGCAYA*GRCSAAFCILQSPFWGRVCTLVRATKTNAPASQATRNTCFLSETVWT*C 407
CS + G Y GRC FC+ + + G C + R N C + T C
Sbjct: 329 CSRSNGTCYNDGRCINGFCVCEPDYIGDRCEINRKDFKFPDIQSCKYNPCVNNAT----C 384
Query: 406 VRTR-SRQT*RC-LQIYGL-CKQLKIC 335
+ + S + C L YGL C+Q +C
Sbjct: 385 IDLKNSGYSCHCPLGFYGLNCEQHLLC 411
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 31.9 bits (69), Expect = 0.52
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = -1
Query: 586 CSYTLGCAYA*GRCSAAFCILQSPFWGRVCTLVRATKTNAPASQATRNTCFLSETVWT*C 407
CS + G Y GRC FC+ + + G C + R N C + T C
Sbjct: 329 CSRSNGTCYNDGRCINGFCVCEPDYIGDRCEINRKDFKFPDIQSCKYNPCVNNAT----C 384
Query: 406 VRTR-SRQT*RC-LQIYGL-CKQLKIC 335
+ + S + C L YGL C+Q +C
Sbjct: 385 IDLKNSGYSCHCPLGFYGLNCEQHLLC 411
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 31.9 bits (69), Expect = 0.52
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = -1
Query: 586 CSYTLGCAYA*GRCSAAFCILQSPFWGRVCTLVRATKTNAPASQATRNTCFLSETVWT*C 407
CS + G Y GRC FC+ + + G C + R N C + T C
Sbjct: 329 CSRSNGTCYNDGRCINGFCVCEPDYIGDRCEINRKDFKFPDIQSCKYNPCVNNAT----C 384
Query: 406 VRTR-SRQT*RC-LQIYGL-CKQLKIC 335
+ + S + C L YGL C+Q +C
Sbjct: 385 IDLKNSGYSCHCPLGFYGLNCEQHLLC 411
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 31.1 bits (67), Expect = 0.91
Identities = 31/118 (26%), Positives = 47/118 (39%)
Frame = +2
Query: 71 TSLTMTTTAESPTRKRATKK*ANSIRSCTLSTS*NSAASRTLRSMPIRARAIPRAENTKG 250
T+ T TTT +PT T + + T +T+ + + T + P T+
Sbjct: 91 TTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTTETTTTPTTTTTET 150
Query: 251 C*SMKPTTKC*LLTTSRCTWTIMTTVYKTDF*LFTQTINL*TALSLPAPCTNTSSPNS 424
+ PTT TT+ T T TT T T T T + AP T T++P +
Sbjct: 151 --TTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTT-TTTAPTTTTTTPTT 205
Score = 29.9 bits (64), Expect = 2.1
Identities = 31/126 (24%), Positives = 43/126 (34%)
Frame = +2
Query: 47 CWTIWC*CTSLTMTTTAESPTRKRATKK*ANSIRSCTLSTS*NSAASRTLRSMPIRARAI 226
C T TS T TTT +PT T + + T +T + + T P
Sbjct: 62 CTTTSTTTTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTT---TPTTETTT 118
Query: 227 PRAENTKGC*SMKPTTKC*LLTTSRCTWTIMTTVYKTDF*LFTQTINL*TALSLPAPCTN 406
T + PTT TT+ T T TT T T + P T
Sbjct: 119 TPTTTTPTTTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTT 178
Query: 407 TSSPNS 424
T++P +
Sbjct: 179 TTTPTT 184
>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
protein ZK512.5 protein.
Length = 1232
Score = 30.3 bits (65), Expect = 1.6
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 8/154 (5%)
Frame = +1
Query: 286 VNNKPLY-VDDYDDGVQDRFLIV--YTNHKFVDSVKFAGSVYEHIKSKQFPIESMYYESL 456
VNNKP +D++ F Y + K + K + E KQ + + YE
Sbjct: 271 VNNKPYNNIDEFHVIFNREFYSYRGYGDSKDLALFKVCKRMQEEFSLKQLEADRLAYEKA 330
Query: 457 ----VTPVRL-FLSHVLMYRRDPKTGFVVYKTLLNNDPMHKHNLMCMSTNNSPLYALIYI 621
+L F H + R +PK + +L+N P+H H+ + +T L+ I
Sbjct: 331 RQEAAESEKLDFNQHKIEEREEPKLNISQPEEVLSNGPLHYHSCLQFATIGVG-GKLVII 389
Query: 622 LNIKTVRNATITIGEDKMEEMISIAVQHLKNFLH 723
T+ + T + S+ V LK FLH
Sbjct: 390 KPAGTIDSIT-----GHVLSTSSVHVDDLKTFLH 418
>AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic
multivulva protein LIN-35 Rb protein.
Length = 961
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 343 LIVYTNHKFVDSVKFAGSVYEHIKSKQFPIESMYYESLVTPVRLFLSHVLMYRRDPKT 516
+I Y N +F D +K+ + + + ES + PVR++L+H L + PKT
Sbjct: 876 IIKYYNIEFRDRIKYIIGQIDSASDEDLMEMPVATESGLMPVRVYLTHKLSIQTLPKT 933
>AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell
lineage protein 35 protein.
Length = 961
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 343 LIVYTNHKFVDSVKFAGSVYEHIKSKQFPIESMYYESLVTPVRLFLSHVLMYRRDPKT 516
+I Y N +F D +K+ + + + ES + PVR++L+H L + PKT
Sbjct: 876 IIKYYNIEFRDRIKYIIGQIDSASDEDLMEMPVATESGLMPVRVYLTHKLSIQTLPKT 933
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical
protein F46C3.3 protein.
Length = 2557
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -2
Query: 753 LFIIVLNKRGMQKVFQMLHGNTYHLLHFVFSYCNSSIAHRFNV*NVNERIQRTIV 589
LF VLN+ G+Q + G L H+ F N++ F + +VNERI+ V
Sbjct: 332 LFKWVLNRIGLQLKCSLHTGVISILDHYGFEKYNNNGVEEFLINSVNERIENLFV 386
>AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical
protein Y47D3A.16 protein.
Length = 580
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 757 YSFYNCTEQTRDAKSFSNAARQYLSSPP 674
Y + NCTE D +SN A +S+PP
Sbjct: 23 YHYDNCTEIMEDDHMYSNVADGQISAPP 50
>Z81091-5|CAB03142.1| 768|Caenorhabditis elegans Hypothetical
protein F55H12.1 protein.
Length = 768
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 138 FAHFFVARFLVGLSAVVVIVKLV 70
+A FF+ FL+G+S VVIV++V
Sbjct: 496 YALFFIMLFLLGISTEVVIVEIV 518
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = +2
Query: 71 TSLTMTTTAESPTRKRATKK*ANSIRSCTLSTS*NSAASRTLRSMPIRARAIPRAENTKG 250
T+ T TTT P+ +T + + T +T ++ T S P + + T
Sbjct: 263 TTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTTTM---QTTTP 319
Query: 251 C*SMKPTTKC*LLTTSRCTWTIMTT 325
+ PTT TTS T TI TT
Sbjct: 320 STTSTPTTTSTTTTTSASTTTISTT 344
>U41272-3|ABM01866.1| 186|Caenorhabditis elegans Hypothetical
protein T03G11.10 protein.
Length = 186
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -1
Query: 481 TKTNAPASQATRNTCFLSETVWT*CVRTRSRQT*RCLQIYGLCKQLKICLVHRRHNR 311
T+ N A + R+ C ++ W CVR+ SR R + + + + K C + R+ R
Sbjct: 38 TEDNRSAHKQIRSLCTRVKS-WETCVRSCSRDNARAILLSSMDQWKKFCALMRKPTR 93
>AF040657-1|AAB95054.1| 758|Caenorhabditis elegans Hypothetical
protein T20H9.6 protein.
Length = 758
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 82 DDNHSGESNKETSDKEVSKLNSQLYVINELKQ 177
DD E +K S K++SK S L +I EL Q
Sbjct: 723 DDKKIEEKSKSHSSKDISKKGSDLMIIIELFQ 754
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,386
Number of Sequences: 27780
Number of extensions: 364735
Number of successful extensions: 1194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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