Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o15
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.59 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   7.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 480 VARTNVQTRPQNGLCSIQN 536
           +  +NVQ  P N LCS+ N
Sbjct: 154 IVESNVQALPVNSLCSLDN 172


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 523 QSPFWGRVCTLVRATKTNAPASQ 455
           QSP  G++  L++    +APA Q
Sbjct: 668 QSPEGGKLTRLIKRELVDAPADQ 690


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 114 NERQRSEQTQFAAVRYQRVETVQRVVL*EACRFEQERFQEQK 239
           NE+QR E  Q      ++ E   RV   +  + +Q++ Q+Q+
Sbjct: 62  NEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQ 103


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 106 NKETSDKEVSKLNSQLYVINELKQCSESYF 195
           N    D  V K NS    INE +   E+Y+
Sbjct: 37  NNNNDDWSVGKKNSNSGTINESEFNDENYW 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,382
Number of Sequences: 438
Number of extensions: 4251
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)