Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o12
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 57 1e-08
Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 55 4e-08
AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding... 53 2e-07
AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding... 53 2e-07
Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical pr... 51 7e-07
Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical pr... 30 1.5
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 30 1.5
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 30 1.5
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 56.8 bits (131), Expect = 1e-08
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Frame = +2
Query: 338 GKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFK 517
G+++ +E+ ++Y VGV + RK + P +EI ++GD S + FK
Sbjct: 7 GRWKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKNTTLSFK 66
Query: 518 LGEEYEEKMPNS-IIKSVTTITNDSEMETKSVIPDTGAKCGRHYQFTDEECIVTLTHENA 694
LG+E++E P+ +KSV N + + I D+ K ++ + + ++T +
Sbjct: 67 LGQEFDETTPDGRTVKSVVNFENGKFIHIQKKIKDSD-KESIITRWLEGDKLITTLESGS 125
Query: 695 SVSGKRYFR 721
VS + Y R
Sbjct: 126 VVSRREYVR 134
>Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical
protein T22G5.2 protein.
Length = 137
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +2
Query: 323 MPSIAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTV 502
M G+++ + E+ D+Y +GV + RK + P++EI +DG+T S +
Sbjct: 4 MNDFIGRWKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNT 63
Query: 503 EHKFKLGEEYEEKMPN 550
+ FKLGEE+ E P+
Sbjct: 64 KLSFKLGEEFVENSPD 79
>AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding
protein protein 5 protein.
Length = 136
Score = 55.2 bits (127), Expect = 4e-08
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = +2
Query: 338 GKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFK 517
G+++ ++E+ +DY VGV + RK + P +EI ++G+ + S + +F
Sbjct: 8 GRWKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTLEFT 67
Query: 518 LGEEYEEKMPNS-IIKSVTTITNDSEMETKSVIPDTGAKCGRHYQFTDEECIVTLTHENA 694
LG E++E P+ KS TI + + + I D+ F E+ I TL +
Sbjct: 68 LGVEFDETTPDGRQFKSTITIEDGKVVHVQKRIKDSDHDSVITRWFEGEKLITTL-QSGS 126
Query: 695 SVSGKRYFR 721
+S + Y R
Sbjct: 127 VISRRAYIR 135
>AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding
protein protein 9,isoform b protein.
Length = 137
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 332 IAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHK 511
+ GK+ +E+ D+Y VGV + R + + + P +E +++GD T+ ++S + K
Sbjct: 7 LVGKWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLK 66
Query: 512 FKLGEEYEEKMPNS-IIKSVTTITND 586
+KLG +EK + + SV +I ND
Sbjct: 67 WKLGTASDEKTADGRDVSSVFSIEND 92
>AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding
protein protein 9,isoform a protein.
Length = 152
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +2
Query: 332 IAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHK 511
+ GK+ +E+ D+Y VGV + R + + + P +E +++GD T+ ++S + K
Sbjct: 22 LVGKWNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLK 81
Query: 512 FKLGEEYEEKMPNS-IIKSVTTITND 586
+KLG +EK + + SV +I ND
Sbjct: 82 WKLGTASDEKTADGRDVSSVFSIEND 107
>Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical
protein T22G5.6 protein.
Length = 137
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +2
Query: 323 MPSIAGKYQHYKNEDIDDYFSAVGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTV 502
M G+++ +E+ ++Y +GV + RK S++SP +EI +DGDT S +
Sbjct: 4 MKEFIGRWKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNN 63
Query: 503 EHKFKLGEEYEEKMPN 550
+ FK+ E++ E P+
Sbjct: 64 KLAFKIREKFVEIAPD 79
>Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical
protein T27F6.2 protein.
Length = 421
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 682 CESHNTFFISKLIVTSTFSSCVRYNRFCLHFTIIGDCCDTFYNGIG 545
CES + +I +L +T T + YN +C F+ + +TF + G
Sbjct: 143 CESQHVAYICELPITYTDNCDFNYNGYCYTFSSTTNSINTFISAQG 188
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +2
Query: 389 VGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSV 568
+GVP RK+ S P DG NS+ TV + + EE +EK P +
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDG------NST--ETVVNSTEKPEERKEKPPKPPKQKQ 64
Query: 569 TTITNDSEMETKSVIPDTGAKCGRHYQF-TDEECIVTLTHENA 694
N + K++I DTG + F +EE +TL + A
Sbjct: 65 KQKQNLNNKFLKNLITDTGKPASMNGLFVAEEEAKLTLLEKKA 107
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +2
Query: 389 VGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSV 568
+GVP RK+ S P DG NS+ TV + + EE +EK P +
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDG------NST--ETVVNSTEKPEERKEKPPKPPKQKQ 64
Query: 569 TTITNDSEMETKSVIPDTGAKCGRHYQF-TDEECIVTLTHENA 694
N + K++I DTG + F +EE +TL + A
Sbjct: 65 KQKQNLNNKFLKNLITDTGKPASMNGLFVAEEEAKLTLLEKKA 107
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +2
Query: 389 VGVPFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSV 568
+GVP RK+ S P DG NS+ TV + + EE +EK P +
Sbjct: 13 IGVPLEARKLPSARIPKKPKETDG------NST--ETVVNSTEKPEERKEKPPKPPKQKQ 64
Query: 569 TTITNDSEMETKSVIPDTGAKCGRHYQF-TDEECIVTLTHENA 694
N + K++I DTG + F +EE +TL + A
Sbjct: 65 KQKQNLNNKFLKNLITDTGKPASMNGLFVAEEEAKLTLLEKKA 107
>Z81530-8|CAB04305.2| 329|Caenorhabditis elegans Hypothetical
protein F36D1.3 protein.
Length = 329
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 622 CVRYNRFCLHFTIIGDCCDTFY--NGIGH 542
C R+ +F L T+I CC TF+ +GH
Sbjct: 145 CRRFMKFSLPITVILPCCFTFFMVPAVGH 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,102
Number of Sequences: 27780
Number of extensions: 311261
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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