Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o11
         (659 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    58   3e-10
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    24   3.7  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 57.6 bits (133), Expect = 3e-10
 Identities = 28/91 (30%), Positives = 49/91 (53%)
 Frame = +1

Query: 319 QLRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGRAC 498
           QLR+G N   K + +  ++L+I+A D +P+E+V+++P LC    VPY  ++ K  LG   
Sbjct: 141 QLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGTL- 199

Query: 499 GVSRPIISCSITINEGSQLKPQIQTIQQEIE 591
            V R   +C       +  KP +  + + I+
Sbjct: 200 -VYRKTCTCVALTQFENADKPNLAKLVETIK 229


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 254 GYALGFTA---ASVSAMFTMPRC*INKTQPLGDLSLH*GNNLHVRERKFRYLPQ 102
           G  LG+T+   A  + +FT      N +QP  DLSL        RE++ + L Q
Sbjct: 23  GLGLGYTSFQSAGYNKLFTQGSADSNYSQPSSDLSLDEEKESLRREKERQALGQ 76


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,717
Number of Sequences: 2352
Number of extensions: 14228
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)