Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o11
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 205 2e-53
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 81 7e-16
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 59 3e-09
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 59 3e-09
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 39 0.003
Z81077-2|CAD56583.2| 656|Caenorhabditis elegans Hypothetical pr... 30 1.3
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 28 5.1
U64835-7|AAG24198.2| 427|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68220-7|CAI79220.1| 260|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68220-6|CAA92486.3| 293|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 205 bits (500), Expect = 2e-53
Identities = 93/123 (75%), Positives = 114/123 (92%)
Frame = +1
Query: 235 VNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEI 414
VNPKA+PLAD L+ K+++LVQQA NYKQL+KGANEATKTLNRG+SE+I+MAADAEPLEI
Sbjct: 6 VNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEI 65
Query: 415 VLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIER 594
+LH+P+LCEDKNVPYVFVRSK ALGRACGV+RP+I+ SIT NEGSQLK QIQ I++++E+
Sbjct: 66 LLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEK 125
Query: 595 LLV 603
LL+
Sbjct: 126 LLI 128
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 81.0 bits (191), Expect = 7e-16
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +1
Query: 235 VNPKAYPLADAALTAKILNLVQQAT-NYKQLRKGANEATKTLNRGLSELIIMAADAEPLE 411
VNP A PLA+ L K+ L+++A+ K LR+G + K L R + I+A + P++
Sbjct: 39 VNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPID 98
Query: 412 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIE 591
+ HIP +CE+K +PYV++ S++ LG A G RP S I + K + + +
Sbjct: 99 VYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRP--SILIFVKPSGDFKELYDEVAEALR 156
Query: 592 RLLV 603
L V
Sbjct: 157 HLTV 160
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +1
Query: 322 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALG 489
+R G N T+ + ++L+++A D PLEIVLH+P LC NVPY ++ K +LG
Sbjct: 137 VRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +1
Query: 322 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALG 489
+R G N T+ + ++L+++A D PLEIVLH+P LC NVPY ++ K +LG
Sbjct: 117 VRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 286 LNLVQQATNYKQ-LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYV 462
L V +A ++ L KG +E K L++ + ++A + + + V + LC + +P +
Sbjct: 26 LRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLI 85
Query: 463 FVRSKQALGRACGVSR 510
V K+ +G CG+ +
Sbjct: 86 KVADKKIIGEYCGLCK 101
>Z81077-2|CAD56583.2| 656|Caenorhabditis elegans Hypothetical
protein F36A2.1b protein.
Length = 656
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 181 VLLIQHRGIVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLN 360
+ + + R + + A T A N Y D AL +LV++ TN+ R + K +N
Sbjct: 111 IQIFKSRNVFSPASTTAMENLLGYEAEDQALEVDSDDLVKKITNFISARNVVADMMKCVN 170
Query: 361 RG 366
G
Sbjct: 171 EG 172
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 286 LNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILC 438
++ V TNY G + + T N GLS+L +M PLE +L I C
Sbjct: 4552 IDSVATITNYATGHNGTSSSLFTPN-GLSQLEVMQRATNPLEKILEIQTHC 4601
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 551 CEPSLMVIEQDIMGLETPQARPSACLDLTNTYGTFLSSHRIG 426
C P +V+ L T P C+DL T G L++++IG
Sbjct: 1165 CPPGYVVVYIPNSPLITNGVNPGTCIDLQCTTGLCLTANQIG 1206
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 551 CEPSLMVIEQDIMGLETPQARPSACLDLTNTYGTFLSSHRIG 426
C P +V+ L T P C+DL T G L++++IG
Sbjct: 507 CPPGYVVVYIPNSPLITNGVNPGTCIDLQCTTGLCLTANQIG 548
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 551 CEPSLMVIEQDIMGLETPQARPSACLDLTNTYGTFLSSHRIG 426
C P +V+ L T P C+DL T G L++++IG
Sbjct: 507 CPPGYVVVYIPNSPLITNGVNPGTCIDLQCTTGLCLTANQIG 548
>U64835-7|AAG24198.2| 427|Caenorhabditis elegans Hypothetical
protein T09D3.4 protein.
Length = 427
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 402 FGICCHYDELRQTTIKRLCGLVRAFT 325
FG CC + ++TI R C + AFT
Sbjct: 184 FGNCCFTGKFGRSTICRFCDTINAFT 209
>Z68220-7|CAI79220.1| 260|Caenorhabditis elegans Hypothetical
protein T20D3.3b protein.
Length = 260
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 299 NKLPITSNFVKARTRPQRRLIVVCLSSS*WQQMPNLSKLFFTFQ-FCAKIRM 451
+KLP TSN+ K L +C S WQ SK F + F K++M
Sbjct: 110 SKLPFTSNYQKEFKNTMALLCQLCGSFENWQLFEIGSKYFTKLEMFGLKLKM 161
>Z68220-6|CAA92486.3| 293|Caenorhabditis elegans Hypothetical
protein T20D3.3a protein.
Length = 293
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 299 NKLPITSNFVKARTRPQRRLIVVCLSSS*WQQMPNLSKLFFTFQ-FCAKIRM 451
+KLP TSN+ K L +C S WQ SK F + F K++M
Sbjct: 143 SKLPFTSNYQKEFKNTMALLCQLCGSFENWQLFEIGSKYFTKLEMFGLKLKM 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,906
Number of Sequences: 27780
Number of extensions: 312535
Number of successful extensions: 791
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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