Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o08
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   4.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.4  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 326 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEILPEIKGEQCSITELCNFTNLK 505
           NLS     T S+ K  I    D L   L+T E        P ++ ++    + C+FTN+K
Sbjct: 552 NLSFVNETTVSVDKVVICIPMDKLNTHLITFE--------PPLEEKKLKAIDRCHFTNVK 603

Query: 506 DVKSVYK 526
            V  ++K
Sbjct: 604 KVILIFK 610


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 431 RPEILPEIKGEQCSITELCNFTNLKDVKS 517
           RPEI PE +G  CSI ++ +   L D KS
Sbjct: 630 RPEISPEPRGINCSIDKI-HSLYLNDKKS 657


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 320  LYNLSLTKNITQSLSKF-GIEKSHDLLVCFLVTNEIDCRPEI 442
            L++   T+    S+  F  +E +H LL+C       +CRP +
Sbjct: 1076 LHSRQYTRESPFSIKDFMSLEHTHTLLICLYWAAPENCRPSL 1117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,385
Number of Sequences: 5004
Number of extensions: 65595
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)