Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o08
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0276 + 2270244-2270314,2270437-2270503,2270613-2270735,227...    42   6e-04
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    32   0.45 
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553...    28   7.4  

>01_01_0276 +
           2270244-2270314,2270437-2270503,2270613-2270735,
           2270844-2270927,2271733-2271819,2272238-2272369,
           2272403-2272498,2272906-2272929
          Length = 227

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
 Frame = +2

Query: 122 TLKIYLYKNVQNIEEIRNHVTNG--EWNCAIIKPSLILDPFQXXXXXXXXXXXXKFSTMV 295
           ++ + L+ +V N  E+   + +G  E   A +  SL+ D F                ++ 
Sbjct: 11  SVSLGLFSDVSNSWELLELMQSGKLEPEVAFLNASLVPDVFPVLAAAHKAVVSQGRESLT 70

Query: 296 TRTVFGEILYNLSLTKNITQSLSKFGI--EKSHDLLVCFLVTNE 421
           TRT+  E++YN S +K+IT+SL + GI  + S+ L   F  +NE
Sbjct: 71  TRTLHSELVYNYSGSKHITESLKRCGISDDTSYILAARFDASNE 114


>11_06_0458 +
           23808402-23808469,23808800-23809684,23810011-23811961,
           23812210-23812285,23813064-23813072,23813243-23813335,
           23813578-23813581,23813780-23814703,23814926-23815909,
           23816073-23816118,23816376-23816951,23817253-23817798,
           23817820-23818416
          Length = 2252

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
 Frame = +2

Query: 449 EIKGEQCSITELCNFTNLKDVKSVY--KLNNLKSDEGLLDIIVSRMTTKNFVSY*N*VMQ 622
           E +GE C   EL N + ++ V + Y  ++ + K  + +LD+I+S+ T +NFV+      Q
Sbjct: 509 EEEGE-CYFNELINRSMIQPVHTQYDGRVYSCKVHDMILDLIISKATEENFVTIVTDRKQ 567

Query: 623 FLLSTPSYTHIICNSELMK--CLYLGCTSQFADLDVYIIINRHPALSS 760
            L+S      +   +   +   LY   T+    L+++    + P LS+
Sbjct: 568 MLVSKDKVHRLSFYNYGQEDVTLYSMVTTHVRSLNIFRYSEQMPPLSN 615


>01_07_0095 +
           41053562-41053603,41054609-41054846,41055064-41055312,
           41055419-41055469,41056044-41056256,41056305-41056367,
           41056422-41056474,41056953-41057067,41057150-41057404,
           41057531-41058618
          Length = 788

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 623 FLLSTPSYTHIICNSELMKCLYLGCTSQFADL 718
           +LL TP    IIC   ++  LY GC + FADL
Sbjct: 266 WLLFTPYSWGIIC---ILVVLYFGCEAMFADL 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,550,011
Number of Sequences: 37544
Number of extensions: 342947
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)