Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o08
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)                   29   4.3  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         28   7.5  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)             28   10.0 
SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)              28   10.0 
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   28   10.0 

>SB_27905| Best HMM Match : MyTH4 (HMM E-Value=0.014)
          Length = 478

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 277 RCDNCSVRR--HSHLKWI*DQARLNNCTVPLAVCNVIPNFLDVLHIFVK 137
           RCDN       HS +K+I    R++    PL  C ++P F+  L  F+K
Sbjct: 23  RCDNLRYDHVNHSRIKYI-TFTRISTLK-PLTPCRLVPQFVKYLWCFIK 69


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +2

Query: 437 EILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGLLDIIVSRMTTKNFVSY*N*V 616
           EI+ +I  EQC   E  N  N+K   ++  + + + +E L ++I    T KN +      
Sbjct: 49  EIITDI--EQCEPVECSNPENVKSYDAIEDIFSSEGEEDLQEMIRENETIKNALIRLKKE 106

Query: 617 MQFLLSTPS 643
             F L+T S
Sbjct: 107 QDFWLTTDS 115


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 214  LNNCTVPLAVCNVIPNFLDVLHIFVKVY 131
            L++CTVPL+ C V+  +L+   IFV +Y
Sbjct: 1644 LSDCTVPLSACTVLLLYLN--RIFVGLY 1669


>SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)
          Length = 786

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 641 SYTHIICNSELMKCLYLGCTSQFADLDVYIIINRHPALSSHFIYHG 778
           SYT     +++  C Y   T+ + D+  Y I N H  ++S+ I HG
Sbjct: 478 SYTFTYVQTDI--CCY-SVTNDYPDIRSYTIANGHADVNSYTITHG 520


>SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)
          Length = 528

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 310 EHSSRNHCTKFRCDNCSVRR-HS 245
           +++ + HCTKF C++C V   HS
Sbjct: 340 KNNLKEHCTKFECNSCLVHELHS 362


>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +3

Query: 135 TFTKMCKTSRKLGITLQTASGTVQLLSLA*S*IHFKWLWRRTEQLSQRNLVQWLRELCSE 314
           +FT MCK  R+ G+ L+ A+  ++LL++  + +    L +   + + R  V  LR  C  
Sbjct: 389 SFTSMCKRLRRAGMKLKAATLMMELLNVLINPVLVTMLTKDLRKTAVRCAV--LRRGCGV 446

Query: 315 KFCTIYRL 338
           K  + YRL
Sbjct: 447 K-ASEYRL 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,936,164
Number of Sequences: 59808
Number of extensions: 452188
Number of successful extensions: 980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)