Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o08
         (791 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515524-1|AAM61891.1|  218|Anopheles gambiae glutathione S-tran...    26   1.2  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.7  
U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    24   4.7  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   6.2  

>AF515524-1|AAM61891.1|  218|Anopheles gambiae glutathione
           S-transferase u3 protein.
          Length = 218

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 452 IKGEQCSITELCNFTNLKDVKSV 520
           I GE+C++ +LC   N+  +K +
Sbjct: 151 IAGEECTLADLCALANVATLKEI 173


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/68 (20%), Positives = 28/68 (41%)
 Frame = +2

Query: 329 LSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEILPEIKGEQCSITELCNFTNLKD 508
           +S+ +N  +++  F     H     F + N+   +   L +I+     +  LC F     
Sbjct: 82  ISIYRNNERAVRWFSRSFDHSAKSTFEIDNQTVSQQAYLQQIRAFNIQVDNLCQFLPQDR 141

Query: 509 VKSVYKLN 532
           V+   K+N
Sbjct: 142 VQDFTKMN 149


>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 240 KWLWRRTEQLSQRNLVQWLRELCSE 314
           K++W R ++   RNL+  + + C E
Sbjct: 297 KFMWERIDRSESRNLIGDMAKRCQE 321


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 387 WLFSIPNLLKLCVIFLVSDKLY 322
           W+F+I  +L  C+I L +  LY
Sbjct: 508 WIFTIACVLGTCLIILQAPSLY 529


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,729
Number of Sequences: 2352
Number of extensions: 15339
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83160600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)