Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o08
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical ... 86 2e-17
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 30 2.2
Z77661-1|CAB01186.1| 341|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical ... 29 3.8
AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical ... 29 3.8
AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 28 6.7
Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical pr... 28 8.8
U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical pr... 28 8.8
AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical ... 28 8.8
>AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical
protein W03F8.4 protein.
Length = 183
Score = 86.2 bits (204), Expect = 2e-17
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Frame = +2
Query: 116 KTTLKIYLYKNVQNIEEIRNHVTNGEWNCAIIKPSLILDPFQXXXXXXXXXXXXKFSTMV 295
+ T ++ L+K+V+N E+ + G+ + A+I+ L+L+PF + M
Sbjct: 19 RKTCRVCLFKDVKNAAELSQQLKEGKIDAALIRAELVLEPFVLLAAANRAVHQSAHNRMS 78
Query: 296 TRTVFGEILYNLSLTKNITQSLSKFGI-EKSHDLLVCFLVTNEIDCRPEILPEIKGEQCS 472
R++ E++Y+LS ++NIT SL FGI E S ++ + ++ IKG
Sbjct: 79 CRSLAAELVYSLSPSRNITDSLVTFGIAEHSTAIIAAIFDDDSGKAMKKLAKAIKGTPVP 138
Query: 473 ITE-LCNFTNLKDVKSVYKLNN-LKSDEGLLDIIVSRMTTKNFVS 601
+ E L F N+ +K VY++ N +EGL D IVSRM +K+FVS
Sbjct: 139 LMEGLPKFANVNMIKKVYQVGNPAFVEEGLSDHIVSRMVSKDFVS 183
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 326 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEIL 445
N ++TKNI ++ ++FG+ ++L L NEID +I+
Sbjct: 174 NTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKII 213
>Z77661-1|CAB01186.1| 341|Caenorhabditis elegans Hypothetical
protein F40G12.1 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 550 FVTFEVI*FVYRFYIFQICKIA*FCNRTLFTFYFGKYFRSAI 425
F+ F I F+Y FY+F + F LF Y G+YF S +
Sbjct: 39 FLVFSWIEFLYLFYLFIFIRSMHFNLTFLFMNYGGQYFCSML 80
>AF040643-1|AAB94960.1| 998|Caenorhabditis elegans Hypothetical
protein F14D2.6 protein.
Length = 998
Score = 29.1 bits (62), Expect = 3.8
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Frame = +2
Query: 494 TNLKDVKSVYKLNNLKSDEGLLDIIVSRMTTKNFVSY*N*VMQFLLSTP----SYTHI-- 655
TN+ D S+ L+ LK+ G+L+I + + +F+ ++ LL TP SYT
Sbjct: 672 TNVSDFTSLKPLSQLKTLNGMLEIYETDLPNISFLGN----LKSLLGTPRLEFSYTQFNT 727
Query: 656 --ICNSELMKCLYLGCTSQFADLDVYI---IINRHP 748
I ++ +K L L F LD + I N HP
Sbjct: 728 TSIHDNPKLKKLGLESLKNFTPLDTKLGVYIANNHP 763
>AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical
protein Y37E11AL.5 protein.
Length = 490
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -2
Query: 481 FCNRTLFTFYFGKYFRSAIYFICN*EAYE*IMAFFYSKLA*TLCYIFGKR*IVQ-NFSEH 305
FC+ L F+F ++ AI+F C + + ++AFF++ Y+F R ++Q F +
Sbjct: 351 FCS-ALLLFFFREHSPMAIFFFCLFQFFHVVIAFFFAS------YLFRLRFLLQRGFDSN 403
Query: 304 SSRNHCTKFRCDNCSVRRHSHLK 236
S + + R + ++ H K
Sbjct: 404 DSTDSLERKRDISRALLEHVDTK 426
>AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical
protein Y113G7B.7 protein.
Length = 314
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 431 RPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGL 556
+P +L EI G +C L NFTN+ +V ++++L K + L
Sbjct: 178 KPRVLEEI-GIRC----LANFTNISEVSNLFELEQWKKAKSL 214
>Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical
protein Y52D3.1a protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 405 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 310
K +S L PN+++LC F+ +Y+I+P
Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128
>U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical
protein C18F10.2 protein.
Length = 711
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 328 IVQNFSEHSSRNHCTKFRCDNCSVRRHSHLKWI*DQARLN 209
I Q F EH K RC+NC+ + + + DQ +++
Sbjct: 285 IGQFFGEHPRSKRTPKPRCENCTEEEYEDVTPLSDQVKMD 324
>AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical
protein Y52D3.1a protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 405 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 310
K +S L PN+++LC F+ +Y+I+P
Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,438
Number of Sequences: 27780
Number of extensions: 369718
Number of successful extensions: 902
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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