Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o08
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34412.1 68417.m04888 expressed protein                             47   2e-05
At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein ...    29   4.7  

>At4g34412.1 68417.m04888 expressed protein
          Length = 143

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
 Frame = +2

Query: 98  VLDPETKTTLKIYLYKNVQNIEEIRNHVTNGEWNCAI--IKPSLILDPFQXXXXXXXXXX 271
           V + +   TL + L+  V N +E+ N + +G     +  +  SLI D F           
Sbjct: 3   VFNLDRGNTLSVSLFSGVTNSKELLNSMLDGSLKLEVSFLNASLIPDIFPLLAAAQKALI 62

Query: 272 XXKFSTMVTRTVFGEILYNLSLTKNITQSLSKFGIEKS 385
                ++ TRT+  E++YN S +K+IT+SL + GI ++
Sbjct: 63  SKSRDSLSTRTLHSELVYNYSGSKHITESLKRCGISEN 100


>At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 386

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 295 NHCTKFRCDNCSVRRHSHLKWI*DQARLNNCTVPLAVCNVIPNFLDVLHIFV 140
           +HC+   C+NC  R   H  W+     L N   P  +C +  + L  L++FV
Sbjct: 149 SHCSI--CNNCVQRFDHHCPWVGQCIALRN--YPYFICFISTSTLLCLYVFV 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,064,306
Number of Sequences: 28952
Number of extensions: 313357
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)