Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o02
(763 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 549 e-155
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 354 1e-96
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 346 4e-94
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 334 1e-90
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 334 2e-90
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 321 1e-86
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 316 5e-85
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 314 1e-84
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 313 3e-84
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 312 6e-84
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 303 3e-81
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 299 5e-80
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 274 2e-72
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 131 2e-29
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 87 3e-16
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 84 3e-15
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 83 7e-15
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 82 2e-14
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 82 2e-14
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 81 4e-14
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 77 6e-13
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 76 1e-12
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 75 2e-12
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 75 2e-12
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 73 8e-12
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 73 8e-12
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 71 3e-11
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 70 7e-11
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 68 2e-10
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 68 2e-10
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 68 3e-10
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 67 4e-10
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 67 5e-10
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 66 9e-10
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 65 2e-09
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 64 3e-09
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 64 4e-09
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 64 5e-09
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 64 5e-09
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 62 1e-08
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 62 1e-08
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 62 1e-08
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 62 1e-08
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 62 2e-08
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 62 2e-08
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 61 3e-08
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 60 6e-08
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 60 6e-08
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 59 1e-07
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 58 3e-07
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 58 3e-07
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 57 4e-07
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 57 5e-07
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 56 1e-06
UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|... 56 1e-06
UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po... 56 1e-06
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 54 5e-06
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 53 7e-06
UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei... 48 3e-04
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 48 3e-04
UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Re... 42 0.017
UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep... 37 0.63
UniRef50_Q6HY70 Cluster: Glycosyl transferase, putative; n=14; B... 34 4.4
UniRef50_Q4Q7J5 Cluster: Putative uncharacterized protein; n=2; ... 33 5.8
UniRef50_Q4DIU6 Cluster: Putative uncharacterized protein; n=1; ... 33 5.8
UniRef50_A6RJ24 Cluster: Putative uncharacterized protein; n=2; ... 33 5.8
UniRef50_A2EI77 Cluster: Putative uncharacterized protein; n=3; ... 33 7.7
UniRef50_P69514 Cluster: RNA-directed RNA polymerase (EC 2.7.7.4... 33 7.7
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 549 bits (1354), Expect = e-155
Identities = 252/254 (99%), Positives = 253/254 (99%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 181
VYPGCDYKTVAALMMEPRDPDSLEIRH GEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY
Sbjct: 1247 VYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 1306
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE
Sbjct: 1307 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 1366
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIF+KTQHKINEGSIFGPWKACQTLA
Sbjct: 1367 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLA 1426
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 721
LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS
Sbjct: 1427 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 1486
Query: 722 AFDQSQHGEAVVLE 763
AFDQSQHGEAVVLE
Sbjct: 1487 AFDQSQHGEAVVLE 1500
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 354 bits (871), Expect = 1e-96
Identities = 158/254 (62%), Positives = 200/254 (78%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 181
VYPG ++++A+L + P D +S E GE SNQFP +D P+E GAQT S++AP H+SK+
Sbjct: 1277 VYPGESFESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSLLAPLHNSKH 1336
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
DPTLL ASI KRLRFR S PY ++P DE+LG+ L+ + CRAY R P PF PDL+ E
Sbjct: 1337 DPTLLPASIGKRLRFRHSEAPYVIAPRDEILGSLLYEAWCRAYHRSPRDVEPFDPDLYAE 1396
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
CINLNE++QLS+KTQA I ANANRSDPDWR++AVRIFAKTQHK+NEGS+FG WKACQTLA
Sbjct: 1397 CINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLA 1456
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 721
LMHDA+VL+ GP+KKYQR FD +DRP L+V+ G TP++++ + +HL P + + NDY+
Sbjct: 1457 LMHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLTP-AVKLANDYT 1515
Query: 722 AFDQSQHGEAVVLE 763
AFDQSQHGEAVV E
Sbjct: 1516 AFDQSQHGEAVVFE 1529
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 346 bits (850), Expect = 4e-94
Identities = 158/254 (62%), Positives = 196/254 (77%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 181
VYPG ++ + A + DP EI + SNQFP VD Y AQ ++++AP HDSK+
Sbjct: 1318 VYPGETFENLVAHFLPAHDPTDREIHWRRQLSNQFPHVDKEYHLAAQPMTLLAPIHDSKH 1377
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
DPTLL+ASI KRLRFRPS PYR+SP DE+LG L+ SLCRAY R P PF LFVE
Sbjct: 1378 DPTLLAASIQKRLRFRPSASPYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVE 1437
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
CI+LNE++QL++KTQAVI NA RSDPDWR++AVRIF+KTQHK+NEGSIFG WKACQTLA
Sbjct: 1438 CIDLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLA 1497
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 721
LMHDA+VL+ GP+KKYQRVFD++DRP +L+++ GQTP +S + +HL P + + NDY+
Sbjct: 1498 LMHDAVVLLLGPVKKYQRVFDARDRPAHLYIHAGQTPSSMSLWCQTHLTP-AVKLANDYT 1556
Query: 722 AFDQSQHGEAVVLE 763
AFDQSQHGEAVVLE
Sbjct: 1557 AFDQSQHGEAVVLE 1570
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 334 bits (822), Expect = 1e-90
Identities = 154/254 (60%), Positives = 187/254 (73%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 181
VYPG ++ +AA + DP EI G+ SNQFP +D + AQ +S++A H K
Sbjct: 1456 VYPGETFENLAAHFLPAHDPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAIHQEKQ 1515
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
DPTLL ASI KRLRFRPS PY+++P DE+LG LF LCRAY R P H F P LF E
Sbjct: 1516 DPTLLPASIQKRLRFRPSDRPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAE 1575
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
CINLNE++QLS+KTQA I NA RSDPDWR++AVRIF+KTQHK+NEGSIFG WKACQTLA
Sbjct: 1576 CINLNEFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLA 1635
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 721
LMHDA+VLI GP+KKYQRVFD +DRP +L+++ G TP +S + HL + + NDY+
Sbjct: 1636 LMHDAVVLILGPVKKYQRVFDQRDRPRHLYIHAGNTPSQMSNWCQQHL-TTAVKLANDYT 1694
Query: 722 AFDQSQHGEAVVLE 763
AFDQSQHGEAVVLE
Sbjct: 1695 AFDQSQHGEAVVLE 1708
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 334 bits (820), Expect = 2e-90
Identities = 150/254 (59%), Positives = 188/254 (74%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 181
VYPG + ++AA + DP + EI H + SNQFPW D P+ Q S+I+ KH +
Sbjct: 1341 VYPGEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNH 1400
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
DPTLL ASI KRLRFRPS P++++ D VLG LF SLCRAY R PN VPF P+LF E
Sbjct: 1401 DPTLLPASINKRLRFRPSDSPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAE 1460
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
CI+LNEY+QLS+KTQ+ I ANA+RSDPDWR+T V+IFAK QHK+N+GSIFG WKACQTLA
Sbjct: 1461 CISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLA 1520
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 721
LMHD ++L+ GP+KKYQR+FD+ DRPPN++ + G+TP L + HL + NDY+
Sbjct: 1521 LMHDYVILVLGPVKKYQRIFDNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYT 1580
Query: 722 AFDQSQHGEAVVLE 763
AFDQSQHGE+VVLE
Sbjct: 1581 AFDQSQHGESVVLE 1594
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 321 bits (789), Expect = 1e-86
Identities = 148/251 (58%), Positives = 187/251 (74%)
Frame = +2
Query: 11 GCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPT 190
G ++ +AA + DPD E+ N + SNQFP++D P+E Q S++AP H DPT
Sbjct: 1340 GYTFENLAAFFLPAHDPDLKEVLINDQKSNQFPYLDAPFELSCQPSSLLAPIHKPASDPT 1399
Query: 191 LLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECIN 370
LL SI KRLRFR S PY ++PSD++LG LFSSLC AY R+PN +PFQP+LF ECI
Sbjct: 1400 LLPGSIKKRLRFRASSSPYSITPSDQLLGQHLFSSLCLAYGRNPNSVLPFQPELFSECIC 1459
Query: 371 LNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMH 550
+N+Y+QLS+KTQA I AN RSDPDWR TAVRIFAK QHK+N+ SIF WKACQTLALMH
Sbjct: 1460 INDYAQLSSKTQATIVANHQRSDPDWRLTAVRIFAKAQHKVNDASIFSGWKACQTLALMH 1519
Query: 551 DAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFD 730
I+L+ GP+KKYQR+FDSKDRPP+++ + G+TP LS++ +HL ++ NDY+AFD
Sbjct: 1520 GYIILVLGPVKKYQRIFDSKDRPPHIYYHCGKTPSQLSQWCQTHLSG-SSYIANDYTAFD 1578
Query: 731 QSQHGEAVVLE 763
QSQHGEAVVLE
Sbjct: 1579 QSQHGEAVVLE 1589
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 316 bits (775), Expect = 5e-85
Identities = 142/254 (55%), Positives = 187/254 (73%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 181
VYPG D+ T+AA + DP+ EI + S QFPW++L + QT S+I+ +H
Sbjct: 1244 VYPGFDFFTLAAHFLPAHDPEVKEIELKDQTSQQFPWLNLDFHISCQTSSLISARHQPGS 1303
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
D TLL AS+ KRLRFRP+ PY+++PSD LG L+ S C+ Y+R PN ++PF LF+E
Sbjct: 1304 DSTLLPASLHKRLRFRPTAAPYQITPSDSFLGNCLYRSWCQVYRRDPNVRLPFNEALFLE 1363
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
CI +N+Y+QLS+KTQA I ANA+RSDPDWR+T V+IFAK+QHK+N+GSIFGPWKACQTLA
Sbjct: 1364 CIAVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAKSQHKVNDGSIFGPWKACQTLA 1423
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 721
LMHD ++L GP+KKYQR+FD +RP +++ + G TP+DL R+ S HL+ NDY+
Sbjct: 1424 LMHDYVILTLGPVKKYQRLFDQLERPSHIYYHAGNTPHDLRRWCSKHLETSHC-TTNDYT 1482
Query: 722 AFDQSQHGEAVVLE 763
AFDQSQHGEAVV E
Sbjct: 1483 AFDQSQHGEAVVFE 1496
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 314 bits (772), Expect = 1e-84
Identities = 150/255 (58%), Positives = 187/255 (73%), Gaps = 1/255 (0%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFP-WVDLPYENGAQTLSVIAPKHDSK 178
VYPG ++ +AA + DP+ EI H GEFS QFP ++ + AQ+ ++IA KHDSK
Sbjct: 1273 VYPGESFENLAAHFLPAHDPEIKEILHRGEFSAQFPILLNQDFSLSAQSSTLIAAKHDSK 1332
Query: 179 YDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFV 358
DPTLL ASI KRL FRPS Y+LS D++LG L+ S CRAY RHP VPF LF
Sbjct: 1333 RDPTLLVASITKRLCFRPSDSSYQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDELLFA 1392
Query: 359 ECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTL 538
ECIN+NE++Q SNKT++ I ANA+RSDPDWR TAV+IF+KTQHKINE SIFG WKACQTL
Sbjct: 1393 ECININEFAQSSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTL 1452
Query: 539 ALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDY 718
ALMHD +VL GP+K YQR+FDS++RP N++ + G +P ++S +A HL+ H NDY
Sbjct: 1453 ALMHDYVVLFLGPVKIYQRIFDSQERPANVYYHAGHSPLEMSEWAQKHLQSGISHT-NDY 1511
Query: 719 SAFDQSQHGEAVVLE 763
+AFDQSQHGEAVV E
Sbjct: 1512 TAFDQSQHGEAVVFE 1526
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 313 bits (769), Expect = 3e-84
Identities = 144/254 (56%), Positives = 186/254 (73%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 181
VYPG +++ +AA + DP+ E+ + S QFPW D P+ Q S+IA KH
Sbjct: 1371 VYPGENFENLAAFFLPAHDPELKEVTRRDQTSAQFPWFDRPFSLSCQPSSLIAAKHSPSQ 1430
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
DPTLL SI KRLRFR S P+ LS D +LG LF +LC+AY+R+P H PF P LF E
Sbjct: 1431 DPTLLPFSIPKRLRFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRNPTHVGPFNPALFAE 1490
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
CI LN+Y+QLS+KTQA + AN +RSDPDWR+TAV+IFAK+QHK+N+ SIFG WKACQTLA
Sbjct: 1491 CIALNDYAQLSSKTQATLVANHSRSDPDWRHTAVKIFAKSQHKVNDASIFGNWKACQTLA 1550
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 721
LMHD ++L GP+KKYQR+FD+ DRPP+L+ + G++P DLS + +HL QI + NDY+
Sbjct: 1551 LMHDFVILSLGPVKKYQRIFDALDRPPHLYTHCGKSPADLSAWCQTHLTG-QIKLTNDYT 1609
Query: 722 AFDQSQHGEAVVLE 763
AFDQSQHGE+V+LE
Sbjct: 1610 AFDQSQHGESVILE 1623
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 312 bits (766), Expect = 6e-84
Identities = 144/254 (56%), Positives = 185/254 (72%)
Frame = +2
Query: 2 VYPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKY 181
VYPG D + +A + DP LEI +SNQFP+++ P L+++AP H+ K
Sbjct: 1453 VYPGVDGEALARTFLAATDPLELEIFFRNNWSNQFPFINRPDTVACNPLTLVAPTHNQKQ 1512
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
DPTLL AS+AKRLRFR S PY ++ D+ LG L+ SL RAY R P VPF P LF
Sbjct: 1513 DPTLLHASLAKRLRFRDSTAPYTITAKDQALGYILYHSLQRAYCRSPE-PVPFDPVLFAS 1571
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
CI N+++QL++KTQA IQANA RSDPDWR+T VRIF+KTQHK+NE S+F WKACQTLA
Sbjct: 1572 CIAENDFAQLTSKTQATIQANAFRSDPDWRHTFVRIFSKTQHKVNENSLFTSWKACQTLA 1631
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYS 721
LMHD ++L+ GP+KKYQR+ DS+DRP +L+++ GQTP+ LS + +HL P +H+ NDY+
Sbjct: 1632 LMHDYLILVLGPVKKYQRILDSRDRPAHLYIHAGQTPHQLSEWCQNHLTP-SVHLANDYT 1690
Query: 722 AFDQSQHGEAVVLE 763
AFDQSQHGEAVVLE
Sbjct: 1691 AFDQSQHGEAVVLE 1704
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 303 bits (744), Expect = 3e-81
Identities = 139/253 (54%), Positives = 183/253 (72%)
Frame = +2
Query: 5 YPGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYD 184
YP ++ +AA + DPD E+ + + S+QFP++D P+ Q S+IA H D
Sbjct: 1241 YPEETFENLAAFFLPAHDPDLKEMLYRDDASSQFPYLDSPFLLSCQPSSLIAAIHKPATD 1300
Query: 185 PTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVEC 364
TLL S+ KRLRFRPS PY +P+D +LG LF SLC Y RHP+ +PF P LF EC
Sbjct: 1301 STLLPLSVNKRLRFRPSTSPYCFTPNDFILGEHLFQSLCSVYNRHPSESIPFDPVLFAEC 1360
Query: 365 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLAL 544
I +N+Y+QLS+KT+A I ANA RSDPDWRYT+V+IFAK+QHK+N+GSIFG WKACQTLAL
Sbjct: 1361 ICINDYAQLSSKTKATIVANAERSDPDWRYTSVKIFAKSQHKVNDGSIFGNWKACQTLAL 1420
Query: 545 MHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSA 724
MHD ++L GP+KKYQR FD KD P +++ + G+TP DLS + ++L Q+++ NDY++
Sbjct: 1421 MHDYVILTLGPVKKYQRFFDQKDCPAHIYKHCGKTPADLSIWCKTNLSH-QVYIENDYTS 1479
Query: 725 FDQSQHGEAVVLE 763
FDQSQHGEAVVLE
Sbjct: 1480 FDQSQHGEAVVLE 1492
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 299 bits (734), Expect = 5e-80
Identities = 137/251 (54%), Positives = 180/251 (71%)
Frame = +2
Query: 11 GCDYKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPT 190
G ++ +AA + DPD E+ + S QFP++D PY Q S++A H DPT
Sbjct: 1270 GESFEELAAHFLPAHDPDLKEVTVGDQTSQQFPYLDQPYTLSCQPSSLLAASHKPASDPT 1329
Query: 191 LLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECIN 370
LL SI+KRLRFR S PY +P+D +LG L+++ C+A+ R PN +PF P LF ECI
Sbjct: 1330 LLIFSISKRLRFRASSSPYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAECIC 1389
Query: 371 LNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMH 550
LNEY+QLS+KTQA I +NA+RSDPDWRYT VRIFAK+QHK+N+GSIFG WKACQTLALMH
Sbjct: 1390 LNEYAQLSSKTQATIVSNASRSDPDWRYTVVRIFAKSQHKVNDGSIFGSWKACQTLALMH 1449
Query: 551 DAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFD 730
D ++L GP+KKYQR+ D DRP ++ + G+TP +LS ++ S LK ++CNDY++FD
Sbjct: 1450 DFVILTLGPVKKYQRIIDHYDRPNFIYTHCGKTPSELSAWSHSFLKG-DAYICNDYTSFD 1508
Query: 731 QSQHGEAVVLE 763
QSQHGEAV+ E
Sbjct: 1509 QSQHGEAVIFE 1519
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 274 bits (672), Expect = 2e-72
Identities = 123/192 (64%), Positives = 154/192 (80%)
Frame = +2
Query: 188 TLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECI 367
T L ASI KRLRFRPS PYR++ DE+LG+ LF + C A R P+ VPF +LF ECI
Sbjct: 1412 TFLPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFAECI 1471
Query: 368 NLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALM 547
LNE++QLS+KTQA+I AN +RSDPDWR++AVRIFAKTQHK+N+ SIFG WKACQTLALM
Sbjct: 1472 ALNEFAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAKTQHKVNDHSIFGGWKACQTLALM 1531
Query: 548 HDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAF 727
HDA+VL+ GP+KKYQR+FD+ DRP N+FVY G TP +++ + ++LKP + V NDY++F
Sbjct: 1532 HDAVVLLLGPVKKYQRIFDAADRPANIFVYAGHTPSEMANWCRANLKPGE-RVANDYTSF 1590
Query: 728 DQSQHGEAVVLE 763
DQSQHGEAVV E
Sbjct: 1591 DQSQHGEAVVFE 1602
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 131 bits (316), Expect = 2e-29
Identities = 56/94 (59%), Positives = 73/94 (77%)
Frame = +2
Query: 482 QHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDL 661
QHK+NE SIF WKACQTLAL HDA++L+ GP+KKYQR FD+K RP ++ + TP++L
Sbjct: 1 QHKVNEASIFSDWKACQTLALAHDAVILLLGPVKKYQRCFDNKARPSKIYYHASHTPFEL 60
Query: 662 SRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
S + +H+K Q H+ NDY+A+DQSQ GEAVVLE
Sbjct: 61 STWCQAHMK-TQHHLTNDYTAYDQSQGGEAVVLE 93
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 87.4 bits (207), Expect = 3e-16
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 2/215 (0%)
Frame = +2
Query: 125 YENGAQTLSVIAP--KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSL 298
Y N QT + H D TL+ A+I +RL + +G LF +
Sbjct: 914 YSNAIQTEDPVIQLFPHQQAKDDTLMWATIDQRLAITTKSENETEFALKKDIGDLLFINY 973
Query: 299 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAK 478
RA K P + +PF DL+ C N + + LS +++ A R DPD+ +++F K
Sbjct: 974 HRAMKL-PKNPIPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVA-RQDPDFPINEIKLFLK 1031
Query: 479 TQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYD 658
+Q + K QT+A A V+++G + +Y R +P N+F+ +TP D
Sbjct: 1032 SQWVKKVEKLGMVVKPGQTIASFAQAPVMLYGTMARYMRRMREVYQPSNIFINCEKTPAD 1091
Query: 659 LSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
L +A ++ + ND++AFDQSQ G + E
Sbjct: 1092 LDEWAKANWNFEGLAHSNDFTAFDQSQDGAMLQFE 1126
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 84.2 bits (199), Expect = 3e-15
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 1/200 (0%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D TL A++ RL+ + S + LG LF + A P + F
Sbjct: 1164 HQQAKDETLFWATVEARLKITSPEKNFTEFISKKHLGDVLFENYKLAMGL-PKEPIAFDQ 1222
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPW-K 523
L+ C + + + LS K +IQ NR PD+ A+ +F K+Q + P K
Sbjct: 1223 KLWEVCADEVQKTYLS-KPINMIQNGQNRQSPDFDPKAISLFLKSQWVKKVEKLGQPRIK 1281
Query: 524 ACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH 703
A QT+A V+++G + +Y R +P N+F+ +TP D+ R+A H ++
Sbjct: 1282 AGQTIASFQQEAVMLYGTMARYMRRVREVFQPANIFINCERTPEDMDRWAREHWNFNRLS 1341
Query: 704 VCNDYSAFDQSQHGEAVVLE 763
NDY+AFDQSQ G + E
Sbjct: 1342 YANDYTAFDQSQDGAMLQFE 1361
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 83.0 bits (196), Expect = 7e-15
Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 3/237 (1%)
Frame = +2
Query: 62 DSLEIRHNGEFSNQFPWVDLPYENGAQT--LSVIAPKHDSKYDPTLLSASIAKRLRFRPS 235
DSL +++ E N + + N QT L+V H D LL +I RLR
Sbjct: 932 DSLADKYDREILN----TNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTP 987
Query: 236 FLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVI 415
+ + LG L+ + RA K P + F P+L+ C + + LS Q I
Sbjct: 988 EANLAEFHAKKDLGDVLWENYHRAMKL-PKEQPDFSPELWERCAAEVQQTYLSKSLQQ-I 1045
Query: 416 QANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPW-KACQTLALMHDAIVLIFGPIKKYQ 592
+ R PD+ + IF K+Q + P K QT+A A V+++G + +Y
Sbjct: 1046 KGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYM 1105
Query: 593 RVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
R + P N+ + +TP DLSR+ +H + ND++AFDQSQ G + E
Sbjct: 1106 RRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFE 1162
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 81.8 bits (193), Expect = 2e-14
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 3/197 (1%)
Frame = +2
Query: 182 DPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 361
D + + AKRLRF R + +V G+ LF + RA P + F L E
Sbjct: 1500 DKATANITYAKRLRFSQRAANERSIAATKVAGSELFEAFTRAI---PLPQETFNDSLLEE 1556
Query: 362 CINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLA 541
C N+ L++K A + NA RSDP W +++F K Q + A Q++A
Sbjct: 1557 CRTENDTVHLTSKPLATLINNAERSDPSWSLNMIKLFIKGQTVKKLEKMGSDATAGQSIA 1616
Query: 542 LMHDAIVLIFGPIKKYQRVFDSKDR---PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCN 712
++L +GP Y R D + R PP+++++ +T D +F ++H +
Sbjct: 1617 SFRAEVLLAWGP---YARYIDRRIRALLPPHVYIHSRRTNEDFEKFVAAHWDHTRESTDG 1673
Query: 713 DYSAFDQSQHGEAVVLE 763
DY+A+D SQ V E
Sbjct: 1674 DYTAYDASQDATFVNFE 1690
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 81.8 bits (193), Expect = 2e-14
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 1/200 (0%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D TLL A+I RL+ +R S + +G LF + +A P ++PF
Sbjct: 1061 HQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGL-PKERIPFSQ 1119
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPW-K 523
+++ C + + LS +I +S PD+ + +F K+Q + P K
Sbjct: 1120 EVWEACAHEVQSKYLSKSKCNLINGTVRQS-PDFDENKIMVFLKSQWVTKVEKLGLPKIK 1178
Query: 524 ACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH 703
QT+A + V++FG + +Y R F +P +F+ TP D+S +A ++ +
Sbjct: 1179 PGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPS 1238
Query: 704 VCNDYSAFDQSQHGEAVVLE 763
+ NDY+AFDQSQ G + E
Sbjct: 1239 LANDYTAFDQSQDGAMLQFE 1258
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 80.6 bits (190), Expect = 4e-14
Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 1/200 (0%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D TL A+I RL+ S + +G LF + +A P +PF P
Sbjct: 896 HQQAKDETLYWATIEARLQCTSSEENLKEFHLKHDIGDILFLNYKQAMNL-PQDPIPFNP 954
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQH-KINEGSIFGPWK 523
DL+ C E + L A++ A A R PD+ A+ +F K+Q K E K
Sbjct: 955 DLWTLCRQEIENTYLKKSAAALVNA-ATRQSPDFDSHAIALFLKSQWVKKTEKIGCLKIK 1013
Query: 524 ACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH 703
A QT+A V+I+G + +Y R F ++ P +FV TP D + F +
Sbjct: 1014 AGQTIAAFMQQTVMIYGTMARYMRKFRNQYCPRKIFVNCETTPADFNSFILDEWNFNRTC 1073
Query: 704 VCNDYSAFDQSQHGEAVVLE 763
ND++AFDQSQ G + E
Sbjct: 1074 FSNDFTAFDQSQDGSILQFE 1093
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 76.6 bits (180), Expect = 6e-13
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 6/205 (2%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D TLL A+I RL ++ +G LF S RA P +PF+
Sbjct: 1146 HQQAKDDTLLWATIEARLVISNPKANWQEYLEKRPVGEVLFESYKRAMHL-PKMPIPFEE 1204
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ--HKINE-GSIFGP 517
DL+ ++ + + LS K + +I+ R PD+ + +F K+Q K+ + G+I
Sbjct: 1205 DLWNSSMHEVQKTYLS-KPENMIKNGMARQSPDYDPNVISLFLKSQWVKKMEKLGAI--K 1261
Query: 518 WKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFAS---SHLK 688
K QT+A H A V++FG + +Y R +P ++ + TP DLS +A+ H K
Sbjct: 1262 IKPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRINCEMTPEDLSSWAAGEGGHWK 1321
Query: 689 PLQIHVCNDYSAFDQSQHGEAVVLE 763
+ ND++AFDQSQ G + E
Sbjct: 1322 FKGPSLANDFTAFDQSQDGAMLQFE 1346
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 75.8 bits (178), Expect = 1e-12
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 5/208 (2%)
Frame = +2
Query: 155 IAP--KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNH 328
+AP +H D TL A+I RL R + G LF + +A P+
Sbjct: 984 VAPMFQHQQAKDETLFKATIDARLSITHPDENKREFAMKKDTGDVLFVNY-KAIMNLPHE 1042
Query: 329 KVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ--HKINE- 499
VPF+P L+ C + + L+ +I +S PD+ + +F K+Q KI +
Sbjct: 1043 PVPFEPRLWNICKAEVQNTYLAKPIANLINGTLRQS-PDFPANKIALFLKSQWVKKIEKI 1101
Query: 500 GSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASS 679
G+I P K QT+A V+++G + +Y R + +P ++F+ +TP D ++F
Sbjct: 1102 GAI--PVKPGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILE 1159
Query: 680 HLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
H Q+ ND++AFDQSQ + E
Sbjct: 1160 HWSYKQVAHTNDFTAFDQSQDAAMLQFE 1187
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 74.9 bits (176), Expect = 2e-12
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 1/200 (0%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D L +I RLR S + +G LF + +A P +PF+
Sbjct: 1098 HQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGL-PKDPIPFEN 1156
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPW-K 523
DL+ C + + LS K +I+ R PD+ A+ +F K+Q + P K
Sbjct: 1157 DLWETCAQEVQQTYLS-KPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIK 1215
Query: 524 ACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH 703
QT+A H V+++G + +Y R + P ++ + +TP +S F +
Sbjct: 1216 PGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFA 1275
Query: 704 VCNDYSAFDQSQHGEAVVLE 763
ND++AFDQSQ G + E
Sbjct: 1276 YANDFTAFDQSQDGAMLQFE 1295
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 74.9 bits (176), Expect = 2e-12
Identities = 75/258 (29%), Positives = 112/258 (43%), Gaps = 6/258 (2%)
Frame = +2
Query: 8 PGCDYKTVAALMMEPRDPDSLEIRHNGEFSNQF-----PWVDLPYE-NGAQTLSVIAPKH 169
P C +T+ + + + E + +SNQF P PY N A + I P+H
Sbjct: 1406 PVCSSQTLGPELDNIQAREFREFKGKNGWSNQFREEAGPNWKHPYRVNQAMSYEAIYPRH 1465
Query: 170 DSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPD 349
D T L+A I KRLRF Y + E G +L + + RH K
Sbjct: 1466 RMDDDLTFLAA-IKKRLRFDNVANNYAKFKAAESRGKYL----AKVFLRHVPIKCGRDQR 1520
Query: 350 LFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKAC 529
L +C E ++LS K+ A I A++ RSD DW + +F K+Q F KA
Sbjct: 1521 LLDQCRQEFEETKLS-KSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAG 1579
Query: 530 QTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVC 709
QTLA I++ F P +Y + + P N +++ + +L FA + V
Sbjct: 1580 QTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFA-KRFSNGSMCVE 1638
Query: 710 NDYSAFDQSQHGEAVVLE 763
+DY+AFD SQ + E
Sbjct: 1639 SDYTAFDVSQDHTILAFE 1656
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 72.9 bits (171), Expect = 8e-12
Identities = 58/207 (28%), Positives = 89/207 (42%)
Frame = +2
Query: 119 LPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSL 298
L N A+ I P+H T L A + KRL F + G FL +
Sbjct: 1778 LELTNAAERYEAIYPRHKGTDTATFLMA-VKKRLSFSSPAAEHAKLRRARPFGKFLLDTF 1836
Query: 299 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAK 478
+ + H + E ++ E +LS K+ A I+ ++ RS DW IF K
Sbjct: 1837 LKRVPLNSRHN----ESMMSEAVHAFEEKKLS-KSMATIENHSGRSCEDWPIDKALIFMK 1891
Query: 479 TQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYD 658
+Q + F KA QTLA A++ F P +Y + P NL+++ G+ D
Sbjct: 1892 SQLCTKFDNRFRSAKAGQTLACFQHAVLCRFAPYMRYIEAKVFEVLPKNLYIHSGKNIDD 1951
Query: 659 LSRFASSHLKPLQIHVCNDYSAFDQSQ 739
L+ + ++H K + +DY AFD SQ
Sbjct: 1952 LAEWVTAH-KFNGVCTESDYEAFDASQ 1977
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 72.9 bits (171), Expect = 8e-12
Identities = 60/212 (28%), Positives = 96/212 (45%)
Frame = +2
Query: 128 ENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRA 307
E T + KH S D S+ KRLRFR R S + +G +FS
Sbjct: 1287 EANPMTHKALYLKHTSD-DTATFMMSVRKRLRFRNYEANRRKSKACNGIGKQMFSVFKET 1345
Query: 308 YKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQH 487
Y+ ++ PDL E + + K+ +I+ +A RSDPDW ++IF K Q
Sbjct: 1346 YQLK---EIDSLPDL--ERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQT 1400
Query: 488 KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSR 667
KA QT+A +++ FGPI + + P N+ +Y + DL +
Sbjct: 1401 CTKMEKRGVDAKAGQTIACFAHSVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDK 1460
Query: 668 FASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
+A + ++ + + +DY AFD+SQ + + LE
Sbjct: 1461 WAKTWVESM-MGTDSDYEAFDRSQDEKVLDLE 1491
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 70.9 bits (166), Expect = 3e-11
Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 1/200 (0%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D LL I RL+ + + LG L+ + RA P + F
Sbjct: 989 HQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGL-PKEQPDFSE 1047
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQH-KINEGSIFGPWK 523
DL+ C + + L KT A ++ R PD+ + IF K+Q K E K
Sbjct: 1048 DLWNRCAEEVQNTYLK-KTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIK 1106
Query: 524 ACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIH 703
QT+A V+++G + +Y R F P N+ + +TP DLSR+ ++ +
Sbjct: 1107 PGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPS 1166
Query: 704 VCNDYSAFDQSQHGEAVVLE 763
ND++AFDQSQ G + E
Sbjct: 1167 YANDFTAFDQSQDGAMLQFE 1186
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 69.7 bits (163), Expect = 7e-11
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 2/202 (0%)
Frame = +2
Query: 164 KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQ 343
+H D TLL A+I R++ +G LF + A P +PF+
Sbjct: 1115 QHQQAKDETLLWATIEARIKISSPEANLAEFILKRDIGDILFENYAIAMNV-PKEPLPFE 1173
Query: 344 PDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ--HKINEGSIFGP 517
L+ C E + L+ A+I + +S PD+ A+ +F K+Q K+ +
Sbjct: 1174 TTLWQACREEVEKTYLAKPVSALINGSLRQS-PDFHPDAISLFLKSQWVKKVEKLGCLHV 1232
Query: 518 WKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQ 697
K QT+A V+++G + +Y R + +P +F+ + P D+++F +
Sbjct: 1233 -KPGQTIASFMQETVMVYGTMSRYMRRIRQQHQPAEIFINCEKNPEDMTQFIKQGWNFKR 1291
Query: 698 IHVCNDYSAFDQSQHGEAVVLE 763
ND++AFDQSQ G + E
Sbjct: 1292 QAYSNDFTAFDQSQDGAMLQFE 1313
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 68.1 bits (159), Expect = 2e-10
Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 3/251 (1%)
Frame = +2
Query: 20 YKTVAALMMEPRDPDSLEIRH--NGEFSN-QFPWVDLPYENGAQTLSVIAPKHDSKYDPT 190
Y++ + P++ + IR+ + +FS+ + P N AQ I P+H + T
Sbjct: 1322 YRSKIVDLFTPKERREMRIRNMQSQQFSDREEPRNKNLITNQAQKFESIYPRHRNSDTVT 1381
Query: 191 LLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECIN 370
L A + KRL SF R ++ + A+++ K F + F+E
Sbjct: 1382 FLMA-VKKRL----SFSQPRKEMQRYLMNKRKGEEMADAFEKFVPIKSNFSREKFIEA-K 1435
Query: 371 LNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMH 550
+ S+ K++A I+ +A RS+ +W+ IF K+Q F KA QTLA
Sbjct: 1436 MEFESKKLEKSKATIENHAQRSNREWKIDEAMIFMKSQLCTKFEKRFVEAKAGQTLACFS 1495
Query: 551 DAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFD 730
++ F P +Y +++ P N +++ G+ DL+ + + + + +DY AFD
Sbjct: 1496 HIVLCRFAPYVRYMEKIVNENLPKNFYIHNGKNFDDLNDYVKKNNFSGRC-IESDYEAFD 1554
Query: 731 QSQHGEAVVLE 763
SQ + + E
Sbjct: 1555 ASQDSQILAFE 1565
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 68.1 bits (159), Expect = 2e-10
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 3/203 (1%)
Frame = +2
Query: 164 KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQ 343
+H D TL A+I KR+ + + LG L+ + A P + F
Sbjct: 960 QHQQAKDETLFWATIEKRIVTSTPESNWTEFKTKRPLGDILWLAYKEAMCL-PAEPIKFD 1018
Query: 344 PDLFVECIN--LNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQH-KINEGSIFG 514
PDL+ +C + N+Y Q K +I+ R PD+ + +F K+Q K NE
Sbjct: 1019 PDLWWKCADEVQNKYLQ---KPLHMIKNGILRQSPDFGERHIALFLKSQWVKKNEKIGTV 1075
Query: 515 PWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPL 694
KA QT+A + + V+IFG + +Y R K P N+ + S++ +H K
Sbjct: 1076 NVKAGQTIAAFYQSTVMIFGTMARYMRRVREKFCPKNILINCEIDQPTASKWVDTHWKFD 1135
Query: 695 QIHVCNDYSAFDQSQHGEAVVLE 763
++ ND+ A+DQSQ G + E
Sbjct: 1136 RLAYTNDFEAYDQSQDGAMLQFE 1158
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 67.7 bits (158), Expect = 3e-10
Identities = 53/203 (26%), Positives = 93/203 (45%)
Frame = +2
Query: 131 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAY 310
N A+ I P+H + T L A + KRLRF + E+ G S+ + +
Sbjct: 1593 NAAERFETIYPRHRASDTATFLMA-VKKRLRFSKPHIEMAKLREAELFG----ESMLKLF 1647
Query: 311 KRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHK 490
+H K + F+E N + + ++K+ A I+ +A RS DW +F K+Q
Sbjct: 1648 LKHVPLKEGHNCE-FMERANRDFELKKTSKSAATIENHAQRSCRDWLADVGLVFMKSQLC 1706
Query: 491 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRF 670
+ F KA Q++ A++ F P +Y + ++ PPN +++ G++ +L +
Sbjct: 1707 TKWDNRFRNAKAAQSIVCFQHAVLCRFAPYMRYIEMKLNEVLPPNFYIHSGKSLEELDAW 1766
Query: 671 ASSHLKPLQIHVCNDYSAFDQSQ 739
+ K + +DY AFD SQ
Sbjct: 1767 VKRY-KFSGVCTESDYEAFDASQ 1788
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 67.3 bits (157), Expect = 4e-10
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 1/204 (0%)
Frame = +2
Query: 131 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAY 310
N A+ I PKH + T + + KRLRF + R +V G F+ + +
Sbjct: 1574 NAAERFETIYPKHKNSDTVTFIMGA-RKRLRFSKPLVEARKLQDAKVYGEFMLQNFPKYV 1632
Query: 311 KRHPNHKVPFQPDLFVECINLNEY-SQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQH 487
H F L ++ S+ +K+ A+I +A RS DW +F K+QH
Sbjct: 1633 PLRKQHNKGFMDKA------LRDFESKKVSKSAAIIANHAGRSCRDWLADVGLVFMKSQH 1686
Query: 488 KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSR 667
+ F KA Q++ A++ F P +Y + + P N +V+ G+ +LS
Sbjct: 1687 CTKFDNRFRDAKAAQSIVCFQHAVLCRFAPYMRYIEMKLQEVLPSNFYVHSGKGLDELSE 1746
Query: 668 FASSHLKPLQIHVCNDYSAFDQSQ 739
+ K I +DY AFD SQ
Sbjct: 1747 WVKKG-KFEGICTESDYEAFDASQ 1769
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 66.9 bits (156), Expect = 5e-10
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 1/204 (0%)
Frame = +2
Query: 131 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRF-RPSFLPYRLSPSDEVLGTFLFSSLCRA 307
N + I P+H + T L A + KRLRF +P +L +D G FL +
Sbjct: 1524 NQRERFETIYPRHRASDTLTFLMA-VKKRLRFSKPHLECAKLKEADHY-GKFLLDEFLKR 1581
Query: 308 YKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQH 487
P+H+ DL E ++ E ++S K+ A+I+ +ANRS DW +F+K+Q
Sbjct: 1582 VPLKPHHR----HDLMSEALHEFEEKKVS-KSAAIIENHANRSCSDWLADVGLVFSKSQI 1636
Query: 488 KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSR 667
+ F KA QT+ ++++ F P +Y + P +++ G+ +L++
Sbjct: 1637 CSKWDNRFRSAKAAQTIVCFQHSVLVRFAPYMRYIEKKVLEVLPKQYYIHSGKGLDELNQ 1696
Query: 668 FASSHLKPLQIHVCNDYSAFDQSQ 739
+ + K +DY AFD SQ
Sbjct: 1697 WVCDN-KFHGACTESDYEAFDASQ 1719
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 66.1 bits (154), Expect = 9e-10
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 4/217 (1%)
Frame = +2
Query: 125 YENGAQTLSVIAP--KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSL 298
+ N QT + +H D TL A+I RL R +G LF +
Sbjct: 1181 HSNAIQTEDSVVQLFQHQQAKDETLYWATIDTRLAISTPEANLREFNMKRDIGDILFMNY 1240
Query: 299 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAK 478
+ P VPF+ L+ + + +S ++ A A+R PD+ + +F K
Sbjct: 1241 AKLMCLPPE-PVPFEERLWKISADEVRNTYISKPIGNLVNA-ASRQSPDFPKNKIALFLK 1298
Query: 479 TQHKINEGSIFGPWKAC--QTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTP 652
+Q + + G K QT+A V+++G + +Y R + +P N+F+ TP
Sbjct: 1299 SQW-VKKTEKLGTLKVKPGQTIASFMQETVMLYGTMARYLRKMRRRFQPDNIFINCETTP 1357
Query: 653 YDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
DL +F S + ND++AFDQSQ G + E
Sbjct: 1358 EDLDKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFE 1394
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 65.3 bits (152), Expect = 2e-09
Identities = 50/211 (23%), Positives = 90/211 (42%)
Frame = +2
Query: 131 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAY 310
N A+ + I P+H S T L + KRLRF + G F+ +
Sbjct: 1690 NAAERFAAIYPRHKSGDTATFLMG-VRKRLRFSKPAVECAKYRDAACFGPFMLKEFLKRV 1748
Query: 311 KRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHK 490
P F F + + E + + T A I+ ++ RS+ DW+ +F K+Q+
Sbjct: 1749 PIRPGRSSVF----FDKAVQDFEEKKTAKST-ATIENHSGRSNLDWKIDTGLVFMKSQNC 1803
Query: 491 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRF 670
+ F KA QT+ H ++ F P +Y + ++ P N +++ G++ +L+ +
Sbjct: 1804 TKFENRFRDAKAAQTIVCFHHIVLARFAPFIRYIEMKVNEALPKNYYIHSGKSLDELNNW 1863
Query: 671 ASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
+ ++ +DY AFD SQ + E
Sbjct: 1864 VIGN-DFTRVCTESDYEAFDASQDAYILAFE 1893
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 64.5 bits (150), Expect = 3e-09
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 3/203 (1%)
Frame = +2
Query: 164 KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQ 343
+H D TL A++ KRL + + LG L+ + RA P+ + F
Sbjct: 926 QHQQAKDETLFWATVEKRLAASTPKDNWTEFKTKRPLGDVLWLAYKRAMVL-PDEPIKFN 984
Query: 344 PDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ--HKINE-GSIFG 514
P+L+ C + + + LS A ++ R PD+ + ++IF K+Q KI++ G I
Sbjct: 985 PELWWACADEVQKTYLSKPIHA-LKNGILRQSPDFDWNKLQIFLKSQWVKKIDKIGKI-- 1041
Query: 515 PWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPL 694
A QT+A + V++FG + +Y R +P + + + +S++ S+
Sbjct: 1042 DVNAGQTIAAFYQPTVMLFGTMARYMRRIRDTYQPGEILINCEKNQKHISKWVESNWNHR 1101
Query: 695 QIHVCNDYSAFDQSQHGEAVVLE 763
ND++A+DQSQ G + E
Sbjct: 1102 LPAYTNDFTAYDQSQDGAMLQFE 1124
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 64.1 bits (149), Expect = 4e-09
Identities = 48/191 (25%), Positives = 83/191 (43%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D L +I +R+R + G LF + + + + P F
Sbjct: 1157 HQQSKDEALFKITIGERIRTADPEKNAKSLQHTLNAGDLLFEAYAQ-FMKVPAEPQAFDK 1215
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKA 526
L+ C L + LS K A +Q A+R DPD+ A+ +F K+Q + +KA
Sbjct: 1216 RLWTHCRQLALRTYLS-KPAANLQQGASRQDPDFPDNAIALFNKSQWVKKLEKVGAKFKA 1274
Query: 527 CQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHV 706
QT++ +VL+ + Y R + +P N+F+ +TP + F + + +
Sbjct: 1275 GQTISAFKQQVVLLTTTMALYLRKKREQHQPDNVFIMCERTPDQFNNFVLTKWDFSRPNY 1334
Query: 707 CNDYSAFDQSQ 739
+DY+ +DQSQ
Sbjct: 1335 TSDYTQYDQSQ 1345
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 63.7 bits (148), Expect = 5e-09
Identities = 59/239 (24%), Positives = 103/239 (43%)
Frame = +2
Query: 47 EPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRF 226
E R+ + + +F ++ D +N A + P+H + D T SA + KRL F
Sbjct: 1208 EDREFKKFGVGWSKQFKDEPNQKDQVEDNCAMLPEAVFPRHFANDDLTFWSA-VKKRLVF 1266
Query: 227 RPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQ 406
+ + G L + R PN F ++ E ++ E ++S K
Sbjct: 1267 KNPLSNAHDFEKAKPFGKELLNIFLRKVPLMPN----FDQRMYDESVSEFEEKKIS-KNA 1321
Query: 407 AVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKK 586
A+I A+ +RS DW + +F K+Q + +F KA QTLA I+ F P+ +
Sbjct: 1322 AMIGAHHDRSTTDWPTNEIFLFIKSQLCTKKEKMFCDAKAGQTLACFSHLILCKFAPLNR 1381
Query: 587 YQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
Y ++ P N +++ + +L R+ S+ + +DY A+D SQ + E
Sbjct: 1382 YIEKKVTQSLPGNFYIHQKKNFDELERWVKSY-NFSGVCTESDYKAYDASQDSCTLAFE 1439
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 63.7 bits (148), Expect = 5e-09
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 5/218 (2%)
Frame = +2
Query: 125 YENGAQTLSVIAP--KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSL 298
Y N QT + + +H D TL A+I RL R + +G LF +
Sbjct: 1024 YSNTIQTENPVVQLFQHQQAKDETLFWATIEARLSITTPEANLREFVLKKDVGDILFFNY 1083
Query: 299 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAK 478
A P V F+P + C + + L+ +I A A+R PD+ + +F K
Sbjct: 1084 HNAMCL-PADPVDFEPRTWEICAAEVKNTYLAKPMANLINA-ASRQSPDFDTNKISLFLK 1141
Query: 479 TQ--HKINE-GSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQT 649
+Q K+ + G++ K QT+A V+++G + +Y R + +P ++F+ T
Sbjct: 1142 SQWVKKVEKLGAVKS--KPGQTIAAFMQQTVMLYGTMARYLRKMRQRFQPKHIFINCETT 1199
Query: 650 PYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
DL++F + ND++AFDQSQ G + E
Sbjct: 1200 TDDLNQFVKQGWNFNRTAQTNDFTAFDQSQDGAMLQFE 1237
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 62.5 bits (145), Expect = 1e-08
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
Frame = +2
Query: 155 IAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTF-LFSSLCRAYKRHPNHK 331
I P+H S T L A+ KRL+F + + + L ++ + + K
Sbjct: 1638 IYPRHKSGDTATFLMAA-RKRLKFS-----FPANERQKYLAAIPCGDTMLKVFLEKVKLK 1691
Query: 332 VPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIF 511
F LF E N E +L K+ A ++ ++ RSDPDW IF K+Q + +
Sbjct: 1692 PAFDHLLFDEARNDFEEKKLG-KSMATLENHSGRSDPDWEVEKALIFMKSQLCTKFDNRY 1750
Query: 512 GPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKP 691
KA QTLA H ++ P +Y K P NL+++ G+ DL + ++
Sbjct: 1751 RDAKAGQTLACFHHNVLCRLAPYVRYIEKKVFKALPRNLYIHSGKNFDDLQDWV---IQN 1807
Query: 692 LQIHVC--NDYSAFDQSQHGEAVVLE 763
+ C +DY AFD SQ + E
Sbjct: 1808 NFVGTCTESDYEAFDSSQDANILAFE 1833
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 62.1 bits (144), Expect = 1e-08
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 2/207 (0%)
Frame = +2
Query: 131 NGAQT--LSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCR 304
N AQT L V H D L++ ++ R+ R L LF
Sbjct: 956 NLAQTSSLEVQLFPHQQAKDDALMTETMKARITTSTRDANLRELHDTNALSGLLFEFYAD 1015
Query: 305 AYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ 484
+ + P +PF P L+ E E + LS KT A I ANR DPD+ V +F K+Q
Sbjct: 1016 -FMKVPKDPMPFNPTLWAESRARAERTYLS-KTAAQILNGANRQDPDFPDNFVALFLKSQ 1073
Query: 485 HKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLS 664
+ +KA QT++ +VL+ + Y R + +P N+F+ +T +
Sbjct: 1074 WVKKLEKVGMQFKAGQTISSFKQQVVLLTTTLALYLRACRNSHQPDNVFIMCEKTSNQFN 1133
Query: 665 RFASSHLKPLQIHVCNDYSAFDQSQHG 745
F + + +DY+ +D+SQ G
Sbjct: 1134 DFVKD-WNFERDNYTSDYTQYDKSQDG 1159
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 62.1 bits (144), Expect = 1e-08
Identities = 48/191 (25%), Positives = 80/191 (41%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D L +I +R+R + G LF + ++ P F
Sbjct: 1082 HQQAKDEALFKITINERIRLATPETNRKALTDTLNAGDLLFEAYA-SFMNVPKETQAFDK 1140
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKA 526
L+ C L + LS T A +Q A R DPD+ A+ +F K+Q + +KA
Sbjct: 1141 RLWAHCRQLALRTYLSKPT-ANLQQGAKRQDPDFPENAIALFNKSQWVKKLEKVGCRFKA 1199
Query: 527 CQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHV 706
QT++ + VL+ + Y R +P N+F+ +TP + F + + +
Sbjct: 1200 GQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFIMCEKTPEQFNSFVLTKWDFTRPNY 1259
Query: 707 CNDYSAFDQSQ 739
+DY+ +DQSQ
Sbjct: 1260 TSDYTQYDQSQ 1270
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 62.1 bits (144), Expect = 1e-08
Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 1/204 (0%)
Frame = +2
Query: 131 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRF-RPSFLPYRLSPSDEVLGTFLFSSLCRA 307
N A+ I P+H + T L A + KRL F P L + G L S +
Sbjct: 1568 NAAERFETIYPRHRASDTVTFLMA-VKKRLSFSNPGKEKGNLFHAASY-GKALLSEFLKR 1625
Query: 308 YKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQH 487
PNH V F + N E +LS K+ A I+ ++ RS DW +IF+K+Q
Sbjct: 1626 VPLKPNHNVRFMEEALW---NFEE-KKLS-KSAATIENHSGRSCRDWPTDVAQIFSKSQL 1680
Query: 488 KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSR 667
+ F KA Q++ A++ F P +Y + + P N +++ G+ +L
Sbjct: 1681 CTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEMKVHEVLPKNYYIHSGKGLEELDA 1740
Query: 668 FASSHLKPLQIHVCNDYSAFDQSQ 739
+ K +I +DY AFD SQ
Sbjct: 1741 WVKKG-KFDRICTESDYEAFDASQ 1763
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 61.7 bits (143), Expect = 2e-08
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 1/204 (0%)
Frame = +2
Query: 131 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRF-RPSFLPYRLSPSDEVLGTFLFSSLCRA 307
N + I P+H T L A + KRL+F +P +L + + G FL S
Sbjct: 1763 NACERFESIYPRHKGNDSITFLMA-VRKRLKFSKPQVEAAKLRRA-KPYGKFLLDSFLSK 1820
Query: 308 YKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQH 487
+H +F E + E + S K+ A I+ +A RS DW IF K+QH
Sbjct: 1821 IPLKASHN----SIMFHEAVQEFEAKKAS-KSAATIENHAGRSCRDWLLDVALIFMKSQH 1875
Query: 488 KINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSR 667
+ KA QTLA A+++ F P +Y + PN +++ G+ +L+
Sbjct: 1876 CTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNE 1935
Query: 668 FASSHLKPLQIHVCNDYSAFDQSQ 739
+ + I +DY AFD SQ
Sbjct: 1936 WVRTR-GFTGICTESDYEAFDASQ 1958
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 61.7 bits (143), Expect = 2e-08
Identities = 47/191 (24%), Positives = 81/191 (42%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQP 346
H D L +I +R+R + G LF + + + + P PF
Sbjct: 1240 HQQAKDEALFKITIGERIRMATPEQNAKQLRHTLNAGDLLFEAYAQ-FMKVPKETQPFDK 1298
Query: 347 DLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKA 526
L+ C L + LS T + Q R DPD+ A+ +F K+Q + +KA
Sbjct: 1299 RLWTHCRQLALRTYLSKPTSNLQQGA--RQDPDFPDNAIALFNKSQWVKKLEKVGARFKA 1356
Query: 527 CQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHV 706
QT++ +VL+ + Y R + +P N+F+ +TP + F + + +
Sbjct: 1357 GQTISAFKQEVVLLTTTMALYLRKKREQHQPDNVFIMCERTPEQFNAFVMTKWDFDRPNY 1416
Query: 707 CNDYSAFDQSQ 739
+DY+ +DQSQ
Sbjct: 1417 TSDYTQYDQSQ 1427
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 60.9 bits (141), Expect = 3e-08
Identities = 53/225 (23%), Positives = 96/225 (42%)
Frame = +2
Query: 89 EFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDE 268
E+S Q ++L N A+ I P+H + T + A + KRLRF + +
Sbjct: 1559 EYSKQKGGMEL--SNAAERFEAIYPRHRASDTVTFIMA-VKKRLRFSKPAVECAKIMKAQ 1615
Query: 269 VLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDW 448
G FL K+ P + + + +E + + ++K+ A I+ ++ RS DW
Sbjct: 1616 QYGKFLLDEFL---KKVPLRRA--RDTVMLEQARQEFFDKKTSKSAATIENHSGRSCRDW 1670
Query: 449 RYTAVRIFAKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNL 628
+IF+K+QH + F KA Q++ ++ F P +Y + P
Sbjct: 1671 LIDTAQIFSKSQHCTKFDNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEKKLHQALPDKF 1730
Query: 629 FVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
+++ G+ +L + + + + +DY AFD SQ V E
Sbjct: 1731 YIHSGKGLEELDCWVKKY-RFDGVCTESDYEAFDASQDQYIVAFE 1774
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 60.1 bits (139), Expect = 6e-08
Identities = 60/213 (28%), Positives = 92/213 (43%), Gaps = 12/213 (5%)
Frame = +2
Query: 161 PKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPN--HKV 334
P H S DP L ++ KRLRF R +D +FL LC A+++ N +
Sbjct: 1139 PLHQSS-DPALWGPTVPKRLRFGTE-QGNRKELADS---SFLGPMLCDAFRKSHNLPFDI 1193
Query: 335 PFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTA-VRIFAKTQ-----HKIN 496
P+ +LF C+ +LS +A+ ++ DP R V F K Q I
Sbjct: 1194 PWDQELFDRCVEDCAQKRLSKSAEALNNLTRDQ-DPILRDNKKVLNFLKGQLINKLDAIT 1252
Query: 497 EGS---IFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSR 667
+GS F K Q + + + FGP +Y + P ++ YGG DL +
Sbjct: 1253 KGSGAESFPTIKPAQMITTYTEEVNAAFGPYIRYLACKLREHSPDHVMHYGGMDLNDLGQ 1312
Query: 668 FASSHLKPLQI-HVCNDYSAFDQSQHGEAVVLE 763
+A H+ + NDY+A+D+S GE + E
Sbjct: 1313 WAREHVPSKRTKSFTNDYTAYDKSCRGETLAFE 1345
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 60.1 bits (139), Expect = 6e-08
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 4/203 (1%)
Frame = +2
Query: 167 HDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKR-HPNHKVPFQ 343
H D S+ KRLRFR + R ++ G +F L + Y HPN
Sbjct: 89 HHKNDDVATFMLSVKKRLRFRDAEKNSRKYEKNKGFGKQMFKILQQTYNLVHPNSL---- 144
Query: 344 PDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ--HKINEGSIFGP 517
P+L C +++ K++ +I+ ++ RSDPDW ++IF K Q K+ + +
Sbjct: 145 PELD-RCEAEFTRKRIA-KSRNLIEKHSYRSDPDWPSNYLKIFLKQQVCTKMEKRGVDA- 201
Query: 518 WKACQTLALMHDAIVLIFGP-IKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPL 694
KA QT+A A++ FGP +++ ++ ++ N+ +Y + DL ++ ++ +
Sbjct: 202 -KAGQTIACFSHAVLCRFGPQLRRTEKALRAQ-LGDNVMIYSQKNYTDLDNWSRLYVDGM 259
Query: 695 QIHVCNDYSAFDQSQHGEAVVLE 763
I +DY AFD+SQ + + E
Sbjct: 260 -IGTDSDYEAFDRSQDEKILSFE 281
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 58.8 bits (136), Expect = 1e-07
Identities = 51/203 (25%), Positives = 85/203 (41%)
Frame = +2
Query: 131 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAY 310
N A I P+H + T + A + KRLRF + G FL +
Sbjct: 1606 NAATRFEAIYPRHKASDTVTFIMA-VKKRLRFSQPAKEMGKLLEARLYGKFLLEQ----F 1660
Query: 311 KRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHK 490
+H K P++ + E + S K+ A I+ +ANRS DW IF+K+Q
Sbjct: 1661 LKHVPLKKAHNPEMMAQAKAAFELKKTS-KSAATIENHANRSCRDWLIDVGLIFSKSQLC 1719
Query: 491 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRF 670
+ F KA Q++ ++ F P +Y + ++ P +++ G+ +L+ +
Sbjct: 1720 TKFDNRFRDAKAAQSIVCFQHEVLCRFAPYIRYIEMKLNEVLPDRFYIHSGKGLEELNDW 1779
Query: 671 ASSHLKPLQIHVCNDYSAFDQSQ 739
H + +DY AFD SQ
Sbjct: 1780 VLKH-DFSGVCTESDYEAFDASQ 1801
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 57.6 bits (133), Expect = 3e-07
Identities = 61/219 (27%), Positives = 88/219 (40%), Gaps = 4/219 (1%)
Frame = +2
Query: 95 SNQFPW----VDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 262
S+QF W L N A I P+H T L A + KRL F R+
Sbjct: 1519 SDQFAWDHRSQGLAINNAATRYESIFPRHHHNDKVTFLMA-VKKRLTFGSPAKNGRMLRE 1577
Query: 263 DEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDP 442
G L KR P K LF+EC+ ++ + ++K A I + RS
Sbjct: 1578 AMPYGEILLKEFL---KRVPI-KNDRNDHLFLECL-MDFEEKKTSKDSATIANHCIRSQN 1632
Query: 443 DWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPP 622
W IF K+Q S+F KA QTLA H ++ F P +Y P
Sbjct: 1633 SWPIDIADIFMKSQLCTKMESMFCEAKAGQTLACFHHVVLARFSPWVRYIEKKLVSSLPD 1692
Query: 623 NLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQ 739
N +++ G+ L+ + ++ + +DY AFD SQ
Sbjct: 1693 NYYIHSGKNFDQLNAWVKAN-NFVGECTESDYEAFDASQ 1730
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 57.6 bits (133), Expect = 3e-07
Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 1/241 (0%)
Frame = +2
Query: 20 YKTVAALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLS 199
+K +A E R D + + E S Q L N A+ I P+H + T +
Sbjct: 1531 HKILAKEFREVRMGDLVSNQFTDEHSKQLGARQLT--NAAERFETIYPRHRANDTVTFIM 1588
Query: 200 ASIAKRLRF-RPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLN 376
A + KRL F P +L + G L + PNH F + N
Sbjct: 1589 A-VKKRLSFSHPGKERAKLHNAMNY-GRALLKEFLKRVPLKPNHNKRFMDEALW---NFE 1643
Query: 377 EYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMHDA 556
E + +K+ A I+ ++ RS DW +IF+K+Q + F KA Q++ A
Sbjct: 1644 E--KKVSKSAATIENHSGRSCRDWPIEVAQIFSKSQLCTKFDNRFRVAKAAQSIVCFQHA 1701
Query: 557 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQS 736
++ F P +Y + + P N +++ G+ +L+ + K + +DY AFD S
Sbjct: 1702 VLCRFAPYMRYIEMKVQEVLPRNFYIHSGKGLDELNAWVRRG-KFDGVCTESDYEAFDAS 1760
Query: 737 Q 739
Q
Sbjct: 1761 Q 1761
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 57.2 bits (132), Expect = 4e-07
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 5/218 (2%)
Frame = +2
Query: 125 YENGAQTLSVIAP--KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSL 298
Y N QT + +H D TL A+I RL R +G LF +
Sbjct: 1141 YSNTIQTNDPVVQLFQHQQAKDETLYWATIEARLSISTPEENLREFKMKADVGDILFMNY 1200
Query: 299 CRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAK 478
+ + P VPF+ L+ + LS ++ A A R PD+ + +F K
Sbjct: 1201 AKLMQL-PAEPVPFEERLWEISAAEVRNTYLSKPIGNLVNA-ATRQSPDFPANKIALFLK 1258
Query: 479 TQ--HKINE-GSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQT 649
+Q K+ + G+I K QT+A H + +Y R ++ +P N+F+ T
Sbjct: 1259 SQWVKKVEKLGAI--KVKPGQTIASFHARNGDVVRYDARYIRKMRARFQPDNIFINCEAT 1316
Query: 650 PYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
P DL++F + + ND++AFDQSQ G + E
Sbjct: 1317 PEDLNKFVKTKWHFNRPAHTNDFTAFDQSQDGAMLQFE 1354
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 56.8 bits (131), Expect = 5e-07
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Frame = +2
Query: 398 KTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 577
K++ + ++ RSD DW+ V +F K+Q+ EG +F KA QTLA ++ FGP
Sbjct: 1258 KSEKMWANHSERSDIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGP 1317
Query: 578 IKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQ-IHVCNDYSAFDQSQ 739
+ + + + +++ G+ + L F + + + + +DY+AFD SQ
Sbjct: 1318 MLRAIESAFLRSCGDSYYIHSGKNFFCLDSFVTKNAEVFDGFSIESDYTAFDSSQ 1372
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 56.0 bits (129), Expect = 1e-06
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 2/168 (1%)
Frame = +2
Query: 266 EVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPD 445
+ LG L+++ Y V DL V C + LS KT+A+++ R PD
Sbjct: 1227 KALGNILWTNFKEQYYSGLE-SVMVDQDLLVSCRAEITKTYLS-KTEALLKGGQLRQSPD 1284
Query: 446 WRYTAVRIFAKTQHKINEGSIFG-PWKACQTLALMHDAIVLIFGPIKKY-QRVFDSKDRP 619
+ + F KTQ + + +G P KA QT+ V+ G + +Y +R+FD
Sbjct: 1285 FDKFKIADFLKTQW-VRKTEKYGLPIKAGQTVTSFMQETVMATGTLSRYMRRMFDKLCTN 1343
Query: 620 PNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
PN++++ +T D S + + ND AFD SQ G V E
Sbjct: 1344 PNVYLHREKTEQDFSTWVKNGWNFSGHATINDCEAFDASQDGAFVEFE 1391
>UniRef50_Q1WAJ6 Cluster: Replicase; n=1; White ash mosaic virus|Rep:
Replicase - White ash mosaic virus
Length = 954
Score = 56.0 bits (129), Expect = 1e-06
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 1/201 (0%)
Frame = +2
Query: 140 QTLSVIAPKHDSKYDPTLLSASIAKRLRF-RPSFLPYRLSPSDEVLGTFLFSSLCRAYKR 316
Q L++ H D L +I +R+RF P L+ + + G LF + Y
Sbjct: 728 QDLTIQLFPHQQAKDEALFKETIKERIRFANPEENNKELAATVRI-GDLLFEAYAD-YMN 785
Query: 317 HPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKIN 496
P PF +++ E L KT A + A R DPD+ + +F K+Q
Sbjct: 786 VPTEASPFLEQEWLDARQEAEKKYLE-KTLAQLTNGAPRQDPDFPDNFIALFNKSQWVKK 844
Query: 497 EGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFAS 676
+ +KA QT++ +VL+F + Y R K +P +F+ + P + F
Sbjct: 845 LDKVGAKFKAGQTISSFKQEVVLLFITMALYLRKQRVKHQPDYVFIMCEENPSAFNEFIQ 904
Query: 677 SHLKPLQIHVCNDYSAFDQSQ 739
+ +DY +DQSQ
Sbjct: 905 GWEFSTPSYT-SDYKQYDQSQ 924
>UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6;
Potexvirus|Rep: Replication-associated protein -
Schlumbergera virus X
Length = 377
Score = 55.6 bits (128), Expect = 1e-06
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Frame = +2
Query: 329 KVPFQPD--LFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEG 502
K P Q D L+ C + + + LS K +++ R PD+ + +F K Q
Sbjct: 37 KEPIQSDEGLWNVCADEVQRTYLS-KPLHMLKNGEGRQSPDFDPKTIALFLKAQWVKKVE 95
Query: 503 SIFGPW-KACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASS 679
+ P KA QT+A V+++G + +Y R +P ++ + TP LS++A
Sbjct: 96 KLGQPRIKAGQTIASFQQEAVMLYGTMARYMRRVREVFQPKDIMINCETTPEALSQWALE 155
Query: 680 HLKPLQIHVCNDYSAFDQSQHGEAVVLE 763
+ + NDY+AFDQSQ G + E
Sbjct: 156 NWNFNRTSYANDYTAFDQSQDGAMLQFE 183
>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
symptomless virus|Rep: RNA-dependent RNA polymerase -
Narcissus symptomless virus
Length = 1871
Score = 53.6 bits (123), Expect = 5e-06
Identities = 48/203 (23%), Positives = 82/203 (40%)
Frame = +2
Query: 131 NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAY 310
N ++ I P+H T L A + KRLRF + E G ++ +
Sbjct: 1474 NASERFESIYPRHKGDDTATFLMA-VKKRLRFSKPAQETAKFRAAEPFGEYMLGIFLKHI 1532
Query: 311 KRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHK 490
K + NH+ L + + ++K+ AVI+ ++ RS DW +F K Q
Sbjct: 1533 KLNKNHE-----PLKMAAAKREFEEKKTSKSAAVIENHSGRSCRDWLIDLGFLFIKNQLC 1587
Query: 491 INEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRF 670
F KA QT+ ++ F P +Y + P +++ G+ DL+ +
Sbjct: 1588 TKFEKRFADAKAAQTILCFQHEVLCRFAPYVRYIEKKLNDALPAKYYIHSGKNIDDLNDW 1647
Query: 671 ASSHLKPLQIHVCNDYSAFDQSQ 739
++ + +DY AFD SQ
Sbjct: 1648 VKAN-NFSGVCTESDYEAFDASQ 1669
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 53.2 bits (122), Expect = 7e-06
Identities = 63/248 (25%), Positives = 103/248 (41%), Gaps = 5/248 (2%)
Frame = +2
Query: 35 ALMMEPRDPDSLEIRHNGEFSNQFPWVDLPYENGAQTLSVIAP--KHDSKYDPTLLSASI 208
AL +EP + L +H+ E ++ L + N QT + + H D TL +I
Sbjct: 1221 ALALEPW-VEPLTDKHSRELHHKA----LGHSNCVQTDNPVVQLFPHQQAKDETLFWKTI 1275
Query: 209 AKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQ 388
R++ R +G LF + A P +PFQ L+ C + +
Sbjct: 1276 DARIKITTPEENVRNFNMASDIGDILFLNYKEAMCL-PADPIPFQQSLWDSCQAEVQQTY 1334
Query: 389 LSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ--HKINEGSIFGPWKACQTLALMHDAIV 562
LS A+ A A R DPD+ +++F K+Q K+ + K QT+A V
Sbjct: 1335 LSKPLAALANA-AQRQDPDFDSNKIQLFLKSQWVKKVEKLGCL-KIKPGQTIASFMQQTV 1392
Query: 563 LIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLK-PLQIHVCNDYSAFDQSQ 739
+++G + +Y R P ++ + P +S + + Q H ND+ AFDQSQ
Sbjct: 1393 MLYGTMARYMRRIRISLCPSHIMINCETNPTQISSWVRENWDFSGQSHE-NDFEAFDQSQ 1451
Query: 740 HGEAVVLE 763
+ E
Sbjct: 1452 DANMLQFE 1459
>UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20;
Carlavirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Potato virus S (strain Peruvian)
Length = 353
Score = 48.0 bits (109), Expect = 3e-04
Identities = 32/124 (25%), Positives = 58/124 (46%)
Frame = +2
Query: 392 SNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMHDAIVLIF 571
+ K+ A I+ ++NRS DW +F+K+Q + F KA QT+ +++ F
Sbjct: 37 TQKSAATIENHSNRSCRDWLADMGMVFSKSQLCTKFDNRFRDAKAAQTIVCFQHSVLCRF 96
Query: 572 GPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEA 751
P +Y ++ P +++ G+ +L+++ K + +DY AFD SQ
Sbjct: 97 APYMRYIEKKLNEVLPATFYIHSGKGLEELNKWVIES-KFEGVCTESDYEAFDASQDQYI 155
Query: 752 VVLE 763
V E
Sbjct: 156 VAFE 159
>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
Phlox virus S
Length = 1990
Score = 47.6 bits (108), Expect = 3e-04
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 5/230 (2%)
Frame = +2
Query: 89 EFSNQFPWVDLPYE--NGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFR-PSFLPYRLSP 259
+F++++P DL N A+ I P+H + T L A + KRLRF P+ +L
Sbjct: 1575 QFTDEYPR-DLGQNLTNQAERFETIYPRHRANDTVTFLMA-VKKRLRFSSPAKEKCKLLD 1632
Query: 260 SDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSD 439
+ V G F+ H +E + ++K+ A I+ ++ RS
Sbjct: 1633 AS-VYGKFMLDEFLSKIPLKKQHDRQM-----MEQAKKEFEDKKTSKSAATIENHSGRSC 1686
Query: 440 PDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGPIKKYQRVFDSKDRP 619
DW IF+K+Q + F KA Q++ ++ F P +Y + P
Sbjct: 1687 RDWLIDIGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEKKLHEVLP 1746
Query: 620 PNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQHGEAVVLE 763
+V+ G+ +L+ + +K VC +DY AFD SQ V E
Sbjct: 1747 ERYYVHSGKGLEELNSWV---IKGGFGGVCTESDYEAFDASQDQYMVAFE 1793
>UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Rep:
Polyprotein - Blackberry virus X
Length = 244
Score = 41.9 bits (94), Expect = 0.017
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Frame = +2
Query: 155 IAPKHDSKYDPTLLSASIAKRLRFRPSFLPY-----RLSPSDEVLGTFLFSSLCRAYKRH 319
I P+H S D ++ KRLRFR SFL + P E L F S L +K +
Sbjct: 108 IFPRH-SNSDRATFKMAVKKRLRFR-SFLENNERLEKYMPFGENLANFFISKL--NFKGN 163
Query: 320 PNHKVPFQPDLFVECINLNEYSQ-LSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ 484
N ++E +++NE+ + K +A + N+ RSDPDW+ + +F K Q
Sbjct: 164 VND--------YLE-VSMNEFKENFFKKDEATMVRNSARSDPDWKKNEIFLFMKQQ 210
>UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep:
Replicase - Lolium latent virus
Length = 440
Score = 36.7 bits (81), Expect = 0.63
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = +2
Query: 164 KHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQ 343
+H D L + AKRL++ + + +G L+ + A + P+ VPF
Sbjct: 318 QHQQPKDGALSIITHAKRLQYASAEANQAEYRAKLQIGAALWENFKTAMEI-PDEPVPFI 376
Query: 344 PDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQ 484
DL+ E S +K++ I+ NR DPDW+ + ++ K Q
Sbjct: 377 RDLW-EQSEAEVLSTYLSKSEMAIKNGKNRQDPDWQDERMFVYLKAQ 422
>UniRef50_Q6HY70 Cluster: Glycosyl transferase, putative; n=14;
Bacillus|Rep: Glycosyl transferase, putative - Bacillus
anthracis
Length = 392
Score = 33.9 bits (74), Expect = 4.4
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 317 HPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFAKTQHKIN 496
HPN ++PFQPD E + + K + +Q N+ D YT+ R F
Sbjct: 140 HPNAEIPFQPDEISEQLLYRMEHEFGVKPKNNLQFMHNKGDITLVYTS-RYFQPNSDLFG 198
Query: 497 EGSIF-GP 517
E +IF GP
Sbjct: 199 ENNIFIGP 206
>UniRef50_Q4Q7J5 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 2514
Score = 33.5 bits (73), Expect = 5.8
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Frame = +3
Query: 321 PIIKFLFSPTSSLNVSISMSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAY--LQKLSIKS 494
P+ F SPT +N +++ ++ + P+ + +S++ +V T + L + + S KS
Sbjct: 1520 PLTAFSASPTFPINATVAKASTT-PSDVHVSARDVSLVATATSKSSLQRHNAASQTSSKS 1578
Query: 495 TKAQ-FSALGKHARH*P*CMMPLS*FLARSRNISEFSTVKIVLPTCLCMEAKLHTISLGL 671
K FS+L A H + N+S FS +++ PTC EA + +
Sbjct: 1579 KKIPTFSSLAAAATH------------SSPNNLSSFSGLRLKRPTCSSDEASPNKVPASS 1626
Query: 672 LR 677
LR
Sbjct: 1627 LR 1628
>UniRef50_Q4DIU6 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 867
Score = 33.5 bits (73), Expect = 5.8
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 134 GAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSL 298
G Q LS + S Y L+ A + +R + + PY L PS + TF FSSL
Sbjct: 345 GEQNLSRVTFLAASMYCDQLIDAGLLQRPAAQTTHSPYHLKPSMPPMDTFSFSSL 399
>UniRef50_A6RJ24 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 436
Score = 33.5 bits (73), Expect = 5.8
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 284 LFSSLCRAYKRHPNHKVPFQPDLFVE--CINL-NEYSQLSNKTQAVIQANANRSDPDWRY 454
+FSS Y + VP + + V C L N Y + +A++ AN SDPDW
Sbjct: 211 VFSSSATVYGTVADTGVPLREEYVVGSGCSGLTNPYGRTKWMCEAILSDLAN-SDPDWEI 269
Query: 455 TAVRIF 472
TA+R F
Sbjct: 270 TALRYF 275
>UniRef50_A2EI77 Cluster: Putative uncharacterized protein; n=3;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1314
Score = 33.1 bits (72), Expect = 7.7
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 237 SFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSP--TSSLNVSISMSTHS 389
SF+TD L S+ FCF Y+ +ND II+ P SLN ++ + HS
Sbjct: 89 SFMTDSLFTNTSMLVFCFIFYL--VNDFVIIRAFNKPEIAKSLNYIMTPNFHS 139
>UniRef50_P69514 Cluster: RNA-directed RNA polymerase (EC 2.7.7.48)
(186 kDa protein) [Contains: Methyltransferase/RNA
helicase (MT/HEL) (129 kDa protein)]; n=29;
Tobamovirus|Rep: RNA-directed RNA polymerase (EC
2.7.7.48) (186 kDa protein) [Contains:
Methyltransferase/RNA helicase (MT/HEL) (129 kDa
protein)] - Cucumber green mottle mosaic virus (strain
watermelon SH) (CGMMV)
Length = 1648
Score = 33.1 bits (72), Expect = 7.7
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Frame = +2
Query: 401 TQAVIQ-ANANRSDPDWRYTAVRIFAKTQHKINEGSIFGPWKACQTLALMHDAIVLIFGP 577
T AV Q AN N D T + + + + SI + A QT+ + +FGP
Sbjct: 1312 TSAVGQLANFNFIDLPAFDTYMHMIKRQPKSRLDTSIQSEYPALQTIVYHPKVVNAVFGP 1371
Query: 578 IKKYQRV-FDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCN-DYSAFDQSQ 739
+ KY F S F Y + P DL F S + D S +D+SQ
Sbjct: 1372 VFKYLTTKFLSMVDSSKFFFYTRKKPEDLQEFFSDLSSHSDYEILELDVSKYDKSQ 1427
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,911,516
Number of Sequences: 1657284
Number of extensions: 19272200
Number of successful extensions: 52657
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 50455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52592
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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