Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o02
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 29 0.96
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.7
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 2.2
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 27 2.9
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.9
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.9
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 3.9
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.1
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 5.1
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 6.7
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 25 8.9
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 8.9
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 28.7 bits (61), Expect = 0.96
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Frame = +3
Query: 204 PLPKDSVSDL-PSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSIS-- 374
P P+D+++ +TD LLL+ + ++ + + P + + II SP +SL+
Sbjct: 75 PSPRDALNITNKKSVTDNLLLSLTSSNQSTNTNLNPSSRVEIINLNSSPPNSLSSQPKHQ 134
Query: 375 ----MSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYLQKLSIKSTKA 503
T + P +LSSK + + IP +++ L K + T +
Sbjct: 135 EFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLTSS 181
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 48 NPGTPTPLKSATMGSSPINF 107
+PGTPT LKS ++ SP +F
Sbjct: 344 DPGTPTSLKSPSLRKSPSSF 363
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 192 YFRPPLPKDSVSDLP-SFLTDFLLLTKSL 275
+ P LP+ S++D P SF +DFL L +++
Sbjct: 521 HINPRLPEGSINDYPSSFWSDFLHLNRAM 549
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 309 INDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKL 410
IND+ ++K L P +LNV T S + +K+
Sbjct: 124 INDVEVVKVLLEPDFNLNVDAICETLSKDSAIKV 157
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 302 DIEMKTEMCQGLRQKEKVCKEGRKVGNGVFWQWRPKVK 189
++E + QG Q+ K KEG + + QWR VK
Sbjct: 905 ELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 20 YKTVAALMMEPRDPDSLEIRHNGEFSNQF 106
++ VA+ + E P LEIR EFS F
Sbjct: 161 FQRVASALYEESSPLELEIRSESEFSKMF 189
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 384 HSFPTRLKLSSKRTQIVRIP 443
H P R++LSS+ QI RIP
Sbjct: 5 HGTPQRIQLSSRAIQICRIP 24
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -2
Query: 243 GRKEGRKRSLLAMEAESK-VGSYFESCLGAITLRVWAPFS*GRSTHGN*LENSP 85
G G +L + S GSY S GA AP S R N L N P
Sbjct: 106 GNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAHAPHSQNRRRRSNHLNNPP 159
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 273 LAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKLSSKR 422
L F + +E + + I FL+ P N +++ +HS + LKL+ R
Sbjct: 783 LTLFAYKFPLEVVAHLYDILFLYGPGILFNFGLALLSHSQESLLKLNMDR 832
>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 169 MFGCYNAEGLGAILIREI 116
+FGC++A GLG L EI
Sbjct: 64 LFGCWSANGLGIALAYEI 81
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 248 RLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLF 355
RL D + S +C +R P + + F PDLF
Sbjct: 180 RLDDPDTSVVNAAVSVICELARRAPKNYLEFAPDLF 215
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 362 CI-NLNEYSQLSNKTQAVIQANANRSDPDWRYT 457
CI ++ YS AN NR DP +RYT
Sbjct: 445 CIASIEPYSLKDEPALLEALANMNREDPSFRYT 477
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,510,585
Number of Sequences: 5004
Number of extensions: 80855
Number of successful extensions: 243
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -