Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o02
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186... 31 0.76
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 30 2.3
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510... 30 2.3
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 30 2.3
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.1
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 29 5.3
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 29 5.3
07_03_0138 - 14140653-14140988 28 7.1
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 28 7.1
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 28 7.1
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 28 7.1
12_01_0142 - 1093127-1093336,1093519-1093731,1093819-1093962,109... 28 9.3
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 9.3
02_01_0202 + 1366149-1366594,1368444-1368444,1368616-1368743,136... 28 9.3
>03_02_0874 +
12017069-12018051,12018137-12018316,12018421-12018600,
12018718-12018797,12018999-12019259,12019360-12019474,
12019631-12019855,12020840-12020849
Length = 677
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 84 MGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSD--LPSFLTDFL 257
MG I HG ++R+A P AL H M + L PP P S S +P+ + FL
Sbjct: 26 MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPPPPSSSSPTVPAAHSPFL 85
Query: 258 L 260
L
Sbjct: 86 L 86
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 4 LSRLRLQNCGSSNDGTPGPRLP*NPPQWGVLQSISMGRS 120
+ LR + SS+ + PR P +PP W L+S+ + S
Sbjct: 1 MKALRRSSTSSSSSASSSPRAPSSPPPWVQLRSLLVASS 39
>04_04_0577 +
26349205-26349669,26350384-26350482,26350887-26351064,
26351900-26352087,26352335-26352373
Length = 322
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 281 FLFSSLCRAYKRHPNHKVPFQPDLFVECINLNEYSQLSNKTQAVIQANANR 433
F + R Y R+ ++ PF PD+ V+ I+L + S L + A I +R
Sbjct: 191 FDMDDVVRKYIRYTLNEKPFNPDVVVDLIHLRKASMLEDAEVAEILNEISR 241
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -3
Query: 545 SRLMSGMLSKGRKLSLR*FYAEFLQICGQ--QCTASRDPN-----DLRSLG*QLESCWK 390
S ++ GM+ G K LR YA+F ++ Q + A D N L SL Q ES WK
Sbjct: 482 STMLKGMIESGTKQGLREGYAQFTEVLSQKTKVIAPDDSNLSKDEILSSLQTQEESIWK 540
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 345 PTSSLNVSISMSTHSFPTRLKLSSKRTQIVRIPT--GGTLLSAYLQKLSIKSTKAQFS 512
PT++ +S T PT + T +IPT G + LS K+S S QFS
Sbjct: 621 PTTARTGELSTPTDKIPTTTRAGDLSTATSKIPTAPGTSELSTTTSKISSTSCAGQFS 678
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 385 TAFQQDSSCHPSERKSFGS--RLAVHCCPHICK 477
T FQ SS ++ F S +L + CCPHI K
Sbjct: 899 TPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISK 931
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 28.7 bits (61), Expect = 5.3
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Frame = +3
Query: 54 GTPTPLKS----ATMGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKD- 218
G P L S A G++ + + S MAP PSA P + R + L PP P
Sbjct: 311 GPPVALSSSAQGAVQGTAGLMASSATSAAAMAPPPSAPSLPEVERVILELLSLPPSPLQP 370
Query: 219 --SVSDLPSFLTDFLLLTKSL---AHFCFHLY 299
S S F+ + LLL L C H++
Sbjct: 371 AMSGSTATCFICNKLLLPTDLHLVLPVCSHMF 402
>07_03_0138 - 14140653-14140988
Length = 111
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 212 WQWRPKVKSGHISSHVWVL*R*GFGRHSHKGDRPMEIDWRTPHCGGFQGSRGPG 51
W+WR +S+ V + G G+ +G+R WR GG +G G G
Sbjct: 21 WRWRWMAAVERVSAAAVV--QAGVGKVGREGERQRGRQWRGRGSGGEEGVEGGG 72
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 251 VCKEGRKVGNGVFWQWRPKVKSGHISSHVWVL 156
V EG + G G W WR KVK ++ WVL
Sbjct: 18 VAVEGDEAGKGRRW-WRVKVKLSTVAVVAWVL 48
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 84 MGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVS-DLPSFLTDFLL 260
MG I HG ++R+A P AL H M + L PP S S +P+ + FLL
Sbjct: 26 MGLLLIQDHGDKEMIRLAFGPEALLHSVMAQARKELALLPPPQAASSSPTVPAAHSPFLL 85
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -3
Query: 641 LHTQTSWEDDLYCRKLADIS*SGQKLRQWH 552
L+ +TSWE + +C+ L + + ++ + WH
Sbjct: 164 LYAETSWEKESWCKALRLAATADKEKKNWH 193
>12_01_0142 -
1093127-1093336,1093519-1093731,1093819-1093962,
1094202-1094312,1094935-1094956,1095457-1095701
Length = 314
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/80 (21%), Positives = 39/80 (48%)
Frame = -3
Query: 734 IGQTQSSHCRHEFVMVSDGTKQTERDRMEFGLHTQTSWEDDLYCRKLADIS*SGQKLRQW 555
+G+ SS + +F++ + + ++ + L ++E + L + +K QW
Sbjct: 110 VGKNLSSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQEFPVASLKQALVALEKEEQW 169
Query: 554 HHASRLMSGMLSKGRKLSLR 495
H +++ MLSKG+ ++R
Sbjct: 170 HRIVQVIKWMLSKGQGKTIR 189
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -2
Query: 534 VWHAFQGPKIEPSLILC*VFANMRTAVYRQSGSERFAFAWMTA*VLLESCEYSLRL 367
VW + P++I +F MR VY+ + R AF+ +LLE+ EY L L
Sbjct: 101 VWSIDSLGRTNPAIIRAFLFRKMRKKVYKSNIILRNAFS-----MLLETAEYLLNL 151
>02_01_0202 +
1366149-1366594,1368444-1368444,1368616-1368743,
1368943-1369039
Length = 223
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 198 RPPLPKDSVSDLPSFLTDFLLLTKSLAH 281
R P+P D +S +P F DF L L H
Sbjct: 37 RVPVPGDGLSPIPMFSVDFRLFVLILPH 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,571,338
Number of Sequences: 37544
Number of extensions: 556613
Number of successful extensions: 1505
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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