Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2o02
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)                       32   0.58 
SB_28673| Best HMM Match : CP12 (HMM E-Value=8.2)                      31   0.77 
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)                 28   7.2  
SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)                     28   7.2  
SB_27781| Best HMM Match : Ank (HMM E-Value=0)                         28   9.5  
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)             28   9.5  

>SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)
          Length = 441

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = +3

Query: 243 LTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKLSSKR 422
           +T F+++  SL++   H +   +  I       SP+SS + S  +S+  FP RL  SS  
Sbjct: 211 ITVFVIVIASLSYHHHHHHTVIVIVIASSSSSPSPSSSSSSSSPLSSSLFPARLSTSSIN 270

Query: 423 T----QIVRIPTGGTLLSAYLQKLSIK 491
           T    Q  R+ T  +  +A L K  I+
Sbjct: 271 TRSLSQSYRVITSSSYENADLSKAKIR 297


>SB_28673| Best HMM Match : CP12 (HMM E-Value=8.2)
          Length = 286

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +3

Query: 198 RPPLPKDSVSDLPSFLTDFLLLTKS----LAHFCFHLYVEPINDIPIIKFLFSPTSSLNV 365
           RPP PK ++  L   L +F    KS       +C  ++ EP+ DIPI + L +    L++
Sbjct: 22  RPPAPKRTLESLRHNLREFREKGKSDLKRAKEYCNVIH-EPLLDIPISQLLLTECEELDI 80

Query: 366 SISMSTHSFPTRLKLS 413
            I+ +  +     +LS
Sbjct: 81  KIACNADTQAPDARLS 96


>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 518 WKACQTLALMHDAIVLIFGPIKKYQRVFDSKDR 616
           W+      L  DAI  +   IKKYQR F+ KDR
Sbjct: 482 WRPRPATLLDEDAIKKLKKDIKKYQRTFEIKDR 514


>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
          Length = 885

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +3

Query: 54  GTPTPLKSATMGSSPINFHGSISLMRMAPKPSAL*HPNMTRNMTRLYFRPPLPKDSVSDL 233
           G  TP  ++TM ++P++   +ISL  ++P+ +++        +TR    P      +S+L
Sbjct: 242 GKTTPPATSTMPTTPLSSSINISLKPLSPRSASISSETTDPTLTREEKPPQFQAQEISNL 301


>SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 172

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +2

Query: 158 APKHDSKYDPTLLSASI---AKRLRFRPSFLPYRLSPSDEVLGT 280
           AP    K D T L A +   A R R  PSF P  LSP    L T
Sbjct: 104 APGPGEKGDHTALKAGLSELAPRARSSPSFFPMALSPIPTPLAT 147


>SB_27781| Best HMM Match : Ank (HMM E-Value=0)
          Length = 485

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 312 NDIPIIKFLFSPTSSLNVSISMSTHSFPTRLKLSSKRTQIVR 437
           ND+  + FL   +  +N  I  STH  P  L +S+    +VR
Sbjct: 200 NDVETVLFLIGVSVDINSRIQDSTHRTPLHLAVSAGAEIMVR 241


>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
 Frame = +2

Query: 188  TLLSASIAKRLRFRPSFLPYRLSPSDEVL-GTFLFSSLCRAYKRH----PNHKVPFQPDL 352
            T +SA+I + +  +P      +    E L    +F  +C++Y +H    P HK P +P  
Sbjct: 761  TSISAAIHRTITSQPFARTINILKDAEFLQSNKMFEVVCKSYYKHVNPKPEHKSPIEPG- 819

Query: 353  FVECINLNEYSQLS--NKTQAVIQANANRSDPDWRYTAVR 466
              +   L  Y  +   NK Q  +  N    D + +Y  ++
Sbjct: 820  --DMDKLRSYFDVDSPNKLQEFVWFN---DDSEQKYVCIK 854


>SB_41190| Best HMM Match : Extensin_2 (HMM E-Value=0.0029)
          Length = 476

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 225 SDLPSFLTDFL-LLTKSLAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSISMSTH 386
           +D+P F+  +  + +  + HF +  +  P NDIP   + +    S ++S  +  H
Sbjct: 231 NDIPHFMYTYHGVPSNDILHFMYTYHGVPSNDIPHFMYTYHGVPSNDISFCIYAH 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,671,091
Number of Sequences: 59808
Number of extensions: 627631
Number of successful extensions: 1601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)