Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2o02
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical pr... 29 2.7
U00031-6|AAP68961.1| 627|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z73906-8|CAA98120.3| 511|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical p... 29 3.6
Z68161-8|CAH60763.1| 625|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical pr... 29 3.6
AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribo... 29 3.6
AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribo... 29 3.6
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 29 4.8
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 29 4.8
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical... 28 6.3
AF068718-4|AAC17765.1| 98|Caenorhabditis elegans Hypothetical ... 28 8.3
AF039716-3|AAB96736.1| 515|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z34801-4|CAA84328.1| 236|Caenorhabditis elegans Hypothetical
protein F59A2.3 protein.
Length = 236
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 210 PKDSVSDLPSFLTDFLL-LTKSLAHFCFHLYVEPINDIP 323
P +V+ +P + F + +TK CFHL + P++D P
Sbjct: 112 PSQAVAPVPVAMPPFTVEITKGDQRLCFHLELVPVDDQP 150
>U00031-6|AAP68961.1| 627|Caenorhabditis elegans Hypothetical
protein B0361.3 protein.
Length = 627
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/98 (21%), Positives = 42/98 (42%)
Frame = +3
Query: 201 PPLPKDSVSDLPSFLTDFLLLTKSLAHFCFHLYVEPINDIPIIKFLFSPTSSLNVSISMS 380
PPL SV+++ S L +F L + ++H +Y+E +I L + + +
Sbjct: 349 PPLNFRSVAEVMSSLENFAYLLREISHQLLEIYLEDEGREFMISILKPIFTDYTMRLCRM 408
Query: 381 THSFPTRLKLSSKRTQIVRIPTGGTLLSAYLQKLSIKS 494
+ ++KL +I T++ Y + IK+
Sbjct: 409 EDNSTPKVKLEEYLERIALAGQLSTIVEEYKDQTEIKN 446
>Z73906-8|CAA98120.3| 511|Caenorhabditis elegans Hypothetical
protein D2030.8 protein.
Length = 511
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 557 IVLIFGPIKKYQRVFDSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCN 712
++L FG K Y+R +D + + G PY+LSRF+ L+ + + + N
Sbjct: 387 VLLFFG--KFYER--SQQDASVHERAFAGSLPYELSRFSHKDLENISVMIKN 434
>Z68161-10|CAN86582.1| 705|Caenorhabditis elegans Hypothetical
protein F20C5.1d protein.
Length = 705
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 413 IQANANRSDPD--WRYTAVRIFAKTQHKINEGSIFGP 517
+Q + N+ DPD +RY + F +Q K+ E + +GP
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 320
>Z68161-8|CAH60763.1| 625|Caenorhabditis elegans Hypothetical
protein F20C5.1c protein.
Length = 625
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 413 IQANANRSDPD--WRYTAVRIFAKTQHKINEGSIFGP 517
+Q + N+ DPD +RY + F +Q K+ E + +GP
Sbjct: 128 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 164
>Z68161-5|CAA92299.2| 764|Caenorhabditis elegans Hypothetical
protein F20C5.1b protein.
Length = 764
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 413 IQANANRSDPD--WRYTAVRIFAKTQHKINEGSIFGP 517
+Q + N+ DPD +RY + F +Q K+ E + +GP
Sbjct: 267 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 303
>Z68161-4|CAD89735.1| 781|Caenorhabditis elegans Hypothetical
protein F20C5.1a protein.
Length = 781
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 413 IQANANRSDPD--WRYTAVRIFAKTQHKINEGSIFGP 517
+Q + N+ DPD +RY + F +Q K+ E + +GP
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 320
>AY185494-1|AAO26317.1| 764|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 short form protein.
Length = 764
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 413 IQANANRSDPD--WRYTAVRIFAKTQHKINEGSIFGP 517
+Q + N+ DPD +RY + F +Q K+ E + +GP
Sbjct: 267 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 303
>AY185493-1|AAO26316.1| 781|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-3 long form protein.
Length = 781
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 413 IQANANRSDPD--WRYTAVRIFAKTQHKINEGSIFGP 517
+Q + N+ DPD +RY + F +Q K+ E + +GP
Sbjct: 284 LQPDLNKVDPDRNYRYCTIPNFPASQGKLREDNRYGP 320
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 725 TQSSHCRHEFVMVSDGTKQTERDRMEFGLH-TQTSWEDDLYC 603
TQS CR F +S+G+ D GL +Q S ED+ +C
Sbjct: 38 TQSCECRDGFARISNGSCAMVSDLARGGLGLSQDSEEDEPFC 79
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 725 TQSSHCRHEFVMVSDGTKQTERDRMEFGLH-TQTSWEDDLYC 603
TQS CR F +S+G+ D GL +Q S ED+ +C
Sbjct: 38 TQSCECRDGFARISNGSCAMVSDLARGGLGLSQDSEEDEPFC 79
>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
protein Y57A10A.31 protein.
Length = 1048
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 308 RLDIEMKTEMCQGLRQKEKVCKE--GRKVGNGVFWQWRPKVKSGHISSHVW 162
+LD +++ C +Q++ + + + +F +W P KSG I H W
Sbjct: 583 QLDAKLRATFCMLTKQEDPIMMQDDAQYYVVRIFEEWTPNSKSGVIGVHGW 633
>AF068718-4|AAC17765.1| 98|Caenorhabditis elegans Hypothetical
protein R01B10.3 protein.
Length = 98
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 359 ECINLNEYSQLSNKTQAVIQANANRSDPDW---RYTAVRIFAKTQHKINEGSI 508
+C+ + +++ ++ + NA R +P W RYTA+ +F + GSI
Sbjct: 21 DCVKQRKVAEVPQIGYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSI 73
>AF039716-3|AAB96736.1| 515|Caenorhabditis elegans Hypothetical
protein W03G9.2 protein.
Length = 515
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 283 KCAKDFVRRRKSVRKEGRSETESFGNGGRK 194
K +D RR +RK GR+ +SF G RK
Sbjct: 390 KTEEDVARRIAHIRKTGRAYIKSFDTGKRK 419
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,510,980
Number of Sequences: 27780
Number of extensions: 454029
Number of successful extensions: 1259
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -