Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2n10
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 81 5e-16
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 67 1e-11
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 67 1e-11
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 67 1e-11
AF026208-2|AAB71269.3| 774|Caenorhabditis elegans Prion-like-(q... 33 0.13
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 32 0.30
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 32 0.30
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 32 0.30
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 30 1.2
U40948-4|AAA81730.2| 517|Caenorhabditis elegans Hypothetical pr... 30 1.6
AY849796-1|AAW34234.1| 517|Caenorhabditis elegans acetylcholine... 30 1.6
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 29 2.1
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 3.8
Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical pr... 24 4.3
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 28 5.0
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 28 5.0
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 28 5.0
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 28 5.0
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 28 6.6
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 27 8.7
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 27 8.7
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 27 8.7
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +2
Query: 485 KELDGYVGFANLPNQVYRKAVKKGFEFTLMVVGESGLGKSTLINSLFLTEV 637
KE Y GFAN PNQV+R+AVK GF+FTLMVVG SGLGKST IN+LFL E+
Sbjct: 22 KENPNYWGFANFPNQVFRRAVKNGFDFTLMVVGRSGLGKSTFINTLFLAEI 72
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +2
Query: 395 LRSTENIMKKAEHPPVAPKPDLPKIEKP-KTKELDGYVGFANLPNQVYRKAVKKGFEFTL 571
+ +T K P AP P + + +L+G+VGF +LP+Q+ +KAV+ GF+F L
Sbjct: 43 INTTTTSKKPTIAAPTAPSPIKSLSDHTGRLMQLNGHVGFDSLPHQLVKKAVEAGFQFNL 102
Query: 572 MVVGESGLGKSTLINSLF 625
M VGE+G GK+TLI SLF
Sbjct: 103 MCVGETGTGKTTLIESLF 120
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +2
Query: 395 LRSTENIMKKAEHPPVAPKPDLPKIEKP-KTKELDGYVGFANLPNQVYRKAVKKGFEFTL 571
+ +T K P AP P + + +L+G+VGF +LP+Q+ +KAV+ GF+F L
Sbjct: 43 INTTTTSKKPTIAAPTAPSPIKSLSDHTGRLMQLNGHVGFDSLPHQLVKKAVEAGFQFNL 102
Query: 572 MVVGESGLGKSTLINSLF 625
M VGE+G GK+TLI SLF
Sbjct: 103 MCVGETGTGKTTLIESLF 120
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +2
Query: 395 LRSTENIMKKAEHPPVAPKPDLPKIEKP-KTKELDGYVGFANLPNQVYRKAVKKGFEFTL 571
+ +T K P AP P + + +L+G+VGF +LP+Q+ +KAV+ GF+F L
Sbjct: 112 INTTTTSKKPTIAAPTAPSPIKSLSDHTGRLMQLNGHVGFDSLPHQLVKKAVEAGFQFNL 171
Query: 572 MVVGESGLGKSTLINSLF 625
M VGE+G GK+TLI SLF
Sbjct: 172 MCVGETGTGKTTLIESLF 189
>AF026208-2|AAB71269.3| 774|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 40
protein.
Length = 774
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 310 LQASEYSAPTNTCPASTNICTSRTSTDTPQEYREYYEESRTPTGRAETRLT*NRKTKNQR 489
++ +Y T T ST S T+T TP EY E E + PT ++ KN +
Sbjct: 175 IEEEDYEVDTTTPTTSTTTTESTTTTTTPDEYEE--EATTEPTSPPPRQIRIQLPDKNGK 232
Query: 490 TR 495
T+
Sbjct: 233 TQ 234
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 312 PSLRVQRPHQHLPRQYQYLHLPHQYRHPSGVQRIL*RKPNT 434
P ++ Q Q+ +Q QY+ + Q+ H +G+Q+I + P+T
Sbjct: 150 PQMQFQMQQQYHSQQQQYIMMQQQHHHMTGMQQIHHQMPST 190
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 312 PSLRVQRPHQHLPRQYQYLHLPHQYRHPSGVQRIL*RKPNT 434
P ++ Q Q+ +Q QY+ + Q+ H +G+Q+I + P+T
Sbjct: 172 PQMQFQMQQQYHSQQQQYIMMQQQHHHMTGMQQIHHQMPST 212
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 312 PSLRVQRPHQHLPRQYQYLHLPHQYRHPSGVQRIL*RKPNT 434
P ++ Q Q+ +Q QY+ + Q+ H +G+Q+I + P+T
Sbjct: 150 PQMQFQMQQQYHSQQQQYIMMQQQHHHMTGMQQIHHQMPST 190
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 312 PSLRVQRPHQHLPRQYQYLHLPHQYRHPSGVQRIL*RKPNT 434
P ++ Q Q+ +Q QY+ + Q+ H +G+Q+I + P+T
Sbjct: 172 PQMQFQMQQQYHSQQQQYIMMQQQHHHMTGMQQIHHQMPST 212
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 419 KKAEHPPV-APKPDLPKIEKPKTKELDG 499
KKA HPP P+P P ++K T E +G
Sbjct: 2348 KKASHPPARPPRPAAPVVQKESTSENNG 2375
>U40948-4|AAA81730.2| 517|Caenorhabditis elegans Hypothetical
protein F55D10.5 protein.
Length = 517
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 256 RRSQWDRHETQQ*RVGRCLQASEYSAPTNTCPASTNICTSRTSTDTPQEYREY 414
++ Q D T+ + GR + ++CP S IC + D PQ ++ Y
Sbjct: 372 QQKQQDEEATKH-QKGRENSTCSHLMSPSSCPNSPRICRNHIPNDVPQSFKSY 423
>AY849796-1|AAW34234.1| 517|Caenorhabditis elegans
acetylcholine-gated chloride channelsubunit ACC-3
protein.
Length = 517
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 256 RRSQWDRHETQQ*RVGRCLQASEYSAPTNTCPASTNICTSRTSTDTPQEYREY 414
++ Q D T+ + GR + ++CP S IC + D PQ ++ Y
Sbjct: 372 QQKQQDEEATKH-QKGRENSTCSHLMSPSSCPNSPRICRNHIPNDVPQSFKSY 423
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 431 HPPVAPKPDLPKIEKPKTKELDGYVGFANLPNQVYR-KAVKKGFEFTLMVVGESGLGKST 607
+PP+ P L ++ K E +++ NQ+Y A+ K + VVGE L
Sbjct: 369 YPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDD 428
Query: 608 LINSLFLTE 634
L+ FLT+
Sbjct: 429 LLYLEFLTK 437
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 349 PASTNICTSRTSTDTPQEYREYYEESRTP 435
P +T+I TS ST TP+ + YEE+ TP
Sbjct: 63 PTTTSISTSTVST-TPERLTKPYEETDTP 90
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 346 CPASTNICTSRTSTDTPQEYREYYEESRTPTG 441
CPA+ N C EY EY +E P G
Sbjct: 90 CPATPNCCPKPCCRGRRPEYEEYEDEEGNPGG 121
>Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical
protein F19B6.4 protein.
Length = 695
Score = 24.2 bits (50), Expect(2) = 4.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 575 VVGESGLGKSTLINSL 622
++G SG GK+TL+N L
Sbjct: 134 IMGSSGAGKTTLLNIL 149
Score = 22.6 bits (46), Expect(2) = 4.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 464 KIEKPKTKELDGYVGFANLPNQVYRKAVKKGFEFTLMVV 580
+ KPKT + A +P+QV A K F+ VV
Sbjct: 70 RFRKPKTLSVTNDTESARIPSQVKTNAKKLVFQNIQAVV 108
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 566 TLMVVGESGLGKSTLINSLF 625
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 428 EHPPVAPKPDLPKIEKP 478
+ PP APK +LPK+ KP
Sbjct: 1633 QRPPRAPKSELPKVAKP 1649
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 428 EHPPVAPKPDLPKIEKP 478
+ PP APK +LPK+ KP
Sbjct: 1633 QRPPRAPKSELPKVAKP 1649
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 428 EHPPVAPKPDLPKIEKP 478
+ PP APK +LPK+ KP
Sbjct: 1633 QRPPRAPKSELPKVAKP 1649
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 566 TLMVVGESGLGKSTLINSLF 625
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 566 TLMVVGESGLGKSTLINSLF 625
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 566 TLMVVGESGLGKSTLINSLF 625
T+ +VG SG GKSTLI LF
Sbjct: 578 TVALVGSSGSGKSTLIRLLF 597
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 22/27 (81%)
Frame = +2
Query: 569 LMVVGESGLGKSTLINSLFLTEVYDKD 649
++++GESG+GKS+L+ F+ +V+D +
Sbjct: 14 ILIIGESGVGKSSLM-LRFVDDVFDPE 39
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 563 FTLMVVGESGLGKSTLINSLFLTE 634
+ + VVG++G GKS+LI+ L +E
Sbjct: 238 YKIYVVGDTGTGKSSLISQLITSE 261
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +2
Query: 563 FTLMVVGESGLGKSTLI 613
F L+++G+SG+GKS+L+
Sbjct: 11 FKLLIIGDSGVGKSSLL 27
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 301 GRCLQASEYSAPTNTCPASTNICTSRT 381
G C+ + YS+P + C + ICT +
Sbjct: 1474 GTCVSINTYSSPGDPCDLTNTICTGNS 1500
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical protein
T26A5.5a protein.
Length = 1076
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -2
Query: 153 ALTPPPLTVSDLK 115
A+TPPP+T+SDLK
Sbjct: 1020 AITPPPVTLSDLK 1032
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/17 (52%), Positives = 16/17 (94%)
Frame = +2
Query: 563 FTLMVVGESGLGKSTLI 613
F L+++G+SG+GKS+L+
Sbjct: 11 FKLLIIGDSGVGKSSLL 27
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,267,161
Number of Sequences: 27780
Number of extensions: 221686
Number of successful extensions: 1058
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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