Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2n10
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 336 HQHLPRQYQYLHLPHQYRHP 395
           H   P   Q  H PH + HP
Sbjct: 450 HSSYPAAIQIGHTPHHHPHP 469


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 532 VQESCEEGLRIHVDGRR*IRLGQVDTNKLALL 627
           +QE   E LR +VD RR    G V    L++L
Sbjct: 500 IQEIYLEALRAYVDNRRRPNPGTVFARLLSVL 531


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 333 PHQHLPRQYQYLHLPHQYRHP 395
           PHQH P QY     PH+   P
Sbjct: 318 PHQHHPSQYH----PHRGSSP 334


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 627 KKSEFISVDLPKPDSPTT 574
           KK++FI+V L + + PTT
Sbjct: 462 KKADFIAVFLSENNYPTT 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,803
Number of Sequences: 438
Number of extensions: 2573
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)