Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2n07
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 1.7
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 3.0
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 3.9
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 3.9
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.9
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 6.8
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 24 6.8
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 24 6.8
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 23 9.0
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 23 9.0
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 23 9.0
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 216 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 73
P+ M + S P+ VY+ + L C NAK + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 162 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 34
Y+ Y L L K + K+ K + +H+ + W LLD +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 3.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 197 IHTPPPSGVLTCTTINITKTW 135
I+ PP + ++TC+T + W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 3.9
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -1
Query: 192 YTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQ 82
Y PT R Y+ L+KN K HL + Q
Sbjct: 173 YNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQ 209
>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 3.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 186 GCMNNSAYL*VFLLQNCYENSKILIYLRDG 275
GC+N YL +L+ C +NSKILI G
Sbjct: 131 GCLNGR-YLSRYLML-CLQNSKILIVCETG 158
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +3
Query: 141 FCNIYCRTRKYARWWGCMNNSAYL*VFLLQNCYENSKILIYLRDGYYFH 287
FC C+ +Y G ++ L F+ + Y+N +L YFH
Sbjct: 128 FCIAICKCIEYLHSKGMVHGEIRLDSFIPISSYDNVYMLTVGSGASYFH 176
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 23.8 bits (49), Expect = 6.8
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -2
Query: 203 RIIHTPPPSGVLTCTTINITKTW 135
+++ TP P+ + + INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 23.8 bits (49), Expect = 6.8
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 195 SYTPTIGRTYVY--DNKYYKNLGCLIKNAKR 109
SY +GRTY++ D++ KN L+ K+
Sbjct: 289 SYCSNVGRTYLFDPDSEQQKNYSFLVALQKK 319
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 144 KNLGC-LIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 37
+N+ C LI NAK K +EH E + + L N V++
Sbjct: 75 RNVDCVLIFNAKTKTFTLEHIDEIARLNALRNPKVSK 111
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 191 TPPPSGVLTCTTINITKT 138
TP P+G + TT+N T+T
Sbjct: 727 TPKPNGTNSVTTLNRTQT 744
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 174 RTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQ---EEKQ 70
R +++ KY K LIK A ++ + E Q EE+Q
Sbjct: 303 RQAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQ 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,576
Number of Sequences: 5004
Number of extensions: 29593
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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