Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2n07
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1558 - 34417801-34417920,34418930-34419051,34419458-344195... 27 4.7
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 27 4.7
10_02_0061 - 4812903-4812940,4813140-4813536 26 6.2
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 26 6.2
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377... 26 6.2
02_05_0382 + 28491318-28491374,28492031-28492114,28492249-284922... 26 6.2
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042... 26 6.2
11_01_0461 + 3569700-3572373,3572477-3572847 26 8.3
10_01_0047 - 656357-656766,657061-657226,657333-657515,657628-65... 26 8.3
02_05_0554 + 29929860-29929959,29932944-29934220 26 8.3
>04_04_1558 -
34417801-34417920,34418930-34419051,34419458-34419531,
34419736-34419819,34419945-34420080,34420806-34420836,
34421228-34421386,34422375-34422595,34422685-34422898
Length = 386
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 102 HLVEHEQEEKQWDLLDNYMVAEDPFLGPGK 13
HLV H +D + ++ +DP+ GPG+
Sbjct: 124 HLVFHALHATPFDRVKAVIIGQDPYHGPGQ 153
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 153 KYYKNLGCLIKNAKRKKHLVEHEQE-EKQWDLLDNYMVAEDPF 28
K+ N+ + KRK+ LVE+ QE EK D+ + ED F
Sbjct: 2330 KHTSNVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQKEDSF 2372
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 12 FCPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF 122
F PVL R PCS L P +R S WR+
Sbjct: 7 FAPVLVLPFRSPCSPLPPSHWRPRRGLRQNGSTRWRW 43
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -1
Query: 105 KHLVEHEQEEKQWDLLDNYMVAEDPFL 25
K LV+H ++WD ++N ++ +P +
Sbjct: 1068 KLLVKHHMRYRKWDEIENRLLRREPLI 1094
>04_03_0306 +
14136338-14136686,14137408-14137442,14137701-14137778,
14138046-14138124,14138731-14138823,14139472-14139556,
14140270-14140345,14140669-14140794,14141039-14141137,
14141238-14141339,14141561-14141671,14141809-14141904,
14142488-14142539,14142624-14142735,14142879-14142943,
14144124-14144521,14145236-14145330,14145989-14146015,
14146081-14146156,14146368-14146421,14146741-14146863,
14146955-14147023
Length = 799
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +3
Query: 183 WGCMNNSAYL*VFLLQNCYENSKILIYLRDG 275
WG +N + Y+ + +L+N + +++L+ DG
Sbjct: 153 WGVINGATYVNIDMLENNKDKTRMLLVEDDG 183
>02_05_0382 +
28491318-28491374,28492031-28492114,28492249-28492272,
28492398-28492472,28493083-28493157,28493198-28493290,
28493332-28493409,28493690-28493767,28494084-28494147,
28494474-28494655,28494729-28495064,28495148-28495267,
28495434-28495923,28496240-28496502
Length = 672
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 132 SPSFCNIYCRTRKYARWWGCMNNSAYL*VFLLQNCYENSKILIYLRDGYY 281
SPS+ + C R W MN+S + + IL Y+R G +
Sbjct: 398 SPSYGHYVCSVRSSPSTWHLMNDSHVDLISEASALNQEGYILFYIRQGKF 447
>01_05_0127 -
18401461-18401464,18401868-18403876,18404060-18404237,
18404381-18404958,18405609-18405611
Length = 923
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -1
Query: 213 INMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 37
I +Y + + R + K+ GCL K+A HEQ KQW+ L + V +
Sbjct: 236 IQARDYRWVSVMPRNSDENLKFILIDGCLNKDADLTGEWY-HEQNGKQWEFLQSLWVLD 293
>11_01_0461 + 3569700-3572373,3572477-3572847
Length = 1014
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 186 PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLV 94
PTI ++Y N+ L I NAK+ +HLV
Sbjct: 488 PTIREIWLYSNRLDGPLPIEIGNAKQLEHLV 518
>10_01_0047 -
656357-656766,657061-657226,657333-657515,657628-657849
Length = 326
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 180 IGRTYVYDNKYYKNL 136
I YV+DN+YY+NL
Sbjct: 243 ITSAYVFDNRYYQNL 257
>02_05_0554 + 29929860-29929959,29932944-29934220
Length = 458
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 185 PPSGVLTCTTINITKTWAVLSKTPSARST 99
P + VLT I+ A L+KTPSAR+T
Sbjct: 64 PFTAVLTHDDARISSLAARLAKTPSARAT 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,913,770
Number of Sequences: 37544
Number of extensions: 165284
Number of successful extensions: 399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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